View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_22 (Length: 216)
Name: NF21110_low_22
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_22 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 28731858 - 28731983
Alignment:
| Q |
71 |
accctatctatctatgcatgctttgaggaaaataacatgttgaacctcgttccacaagttgtcgctcaactgatnnnnnnntttaaattattacatcgga |
170 |
Q |
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| T |
28731858 |
accctatctatctatgcatgctttgaggaaaataacaagttgaacctcgttccaaaagttgtcgctcaactgataaattttttaaaattattacatcggg |
28731957 |
T |
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| Q |
171 |
cttcgtgatcggtattcgaaccccga |
196 |
Q |
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| T |
28731958 |
cttcgtgatcggtattcgaaccccga |
28731983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 4929 - 4764
Alignment:
| Q |
21 |
aatataactatgtttccttaattaatattatagtataatctttttatttgaccctatctatctatgcatgctttgaggaaaataacatgttgaacctcgt |
120 |
Q |
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| T |
4929 |
aatataactatgtttccttaattaatattatagtatgatctttatctttgaccctat----ctatgtatgctttgagaataataacaagttgaacctcct |
4834 |
T |
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| Q |
121 |
tccacaagttgtcgctcaactgatnnnnnnntttaaattattacatcggacttcgtgatcggtattcgaa |
190 |
Q |
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| T |
4833 |
tctacaagttgtggctcaattgataatttttttaaaattattacatcggacttcgtgatcggtattcgaa |
4764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 18871541 - 18871376
Alignment:
| Q |
21 |
aatataactatgtttccttaattaatattatagtataatctttttatttgaccctatctatctatgcatgctttgaggaaaataacatgttgaacctcgt |
120 |
Q |
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| T |
18871541 |
aatataactatgtttccttaattaatattatagtatggtttttatctttgaccctat----ctatgtatgctttgaggataataacaagttgaaccgcct |
18871446 |
T |
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| Q |
121 |
tccacaagttgtcgctcaactgatnnnnnnntttaaattattacatcggacttcgtgatcggtattcgaa |
190 |
Q |
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| T |
18871445 |
tccataagttgtggctcaactgataatttttttaaaattattacatcgggtttcgtgatcagtattcgaa |
18871376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 133724 - 133559
Alignment:
| Q |
21 |
aatataactatgtttccttaattaatattatagtataatctttttatttgaccctatctatctatgcatgctttgaggaaaataacatgttgaacctcgt |
120 |
Q |
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| T |
133724 |
aatataactatttttccttaacttatattatagtctaatttttatctttgacc----gtatctatgtattctttgaagataataacaagttaaacctctt |
133629 |
T |
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| Q |
121 |
tccacaagttgtcgctcaactgatnnnnnnntttaaattattacatcggacttcgtgatcggtattcgaa |
190 |
Q |
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| T |
133628 |
tccacaagtcgtggctaaactgataaaaaatttaaaattgttacatcgggattcgtgatttgtattcgaa |
133559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 2042882 - 2042816
Alignment:
| Q |
21 |
aatataactatgtttccttaattaatattatagtataatctttttatttgaccctatctatctatgc |
87 |
Q |
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| T |
2042882 |
aatataactatttttccttaattaataatatagtctaatcgttatctttgaccgtttctatgtatgc |
2042816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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