View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21110_low_3 (Length: 642)

Name: NF21110_low_3
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21110_low_3
NF21110_low_3
[»] chr8 (12 HSPs)
chr8 (25-623)||(32166288-32166890)
chr8 (88-316)||(33897618-33897847)
chr8 (96-308)||(35574613-35574827)
chr8 (226-321)||(12736074-12736169)
chr8 (238-295)||(29969129-29969186)
chr8 (95-183)||(29969153-29969241)
chr8 (217-308)||(6630512-6630603)
chr8 (131-181)||(6803876-6803926)
chr8 (227-296)||(31475059-31475128)
chr8 (90-181)||(6630316-6630406)
chr8 (242-295)||(7405544-7405597)
chr8 (251-295)||(29093581-29093625)
[»] chr7 (18 HSPs)
chr7 (88-362)||(34891414-34891690)
chr7 (96-324)||(42012690-42012918)
chr7 (96-287)||(31171287-31171480)
chr7 (88-276)||(3191572-3191760)
chr7 (96-287)||(31152725-31152919)
chr7 (206-279)||(32138888-32138961)
chr7 (217-321)||(32962351-32962455)
chr7 (226-276)||(23944096-23944146)
chr7 (221-276)||(34891380-34891435)
chr7 (229-295)||(8354378-8354444)
chr7 (134-253)||(22593597-22593722)
chr7 (103-261)||(8900670-8900831)
chr7 (228-353)||(33362340-33362465)
chr7 (90-181)||(33362347-33362436)
chr7 (222-260)||(7463864-7463902)
chr7 (241-287)||(44755106-44755152)
chr7 (206-242)||(27651379-27651415)
chr7 (206-258)||(29152350-29152402)
[»] chr5 (23 HSPs)
chr5 (95-322)||(7113573-7113804)
chr5 (206-321)||(973111-973226)
chr5 (209-321)||(14138548-14138660)
chr5 (97-295)||(40483739-40483939)
chr5 (95-183)||(2243249-2243335)
chr5 (209-276)||(2243321-2243388)
chr5 (82-183)||(17739908-17740009)
chr5 (226-302)||(22780323-22780399)
chr5 (222-260)||(972845-972883)
chr5 (227-301)||(7215448-7215522)
chr5 (225-295)||(41264392-41264462)
chr5 (206-255)||(7215322-7215371)
chr5 (227-308)||(40483703-40483783)
chr5 (82-182)||(7215230-7215329)
chr5 (217-261)||(37077663-37077707)
chr5 (77-192)||(39730369-39730484)
chr5 (222-274)||(39808239-39808291)
chr5 (217-308)||(7982353-7982444)
chr5 (251-321)||(7982214-7982284)
chr5 (206-276)||(17736759-17736829)
chr5 (206-316)||(37077760-37077870)
chr5 (247-308)||(17739907-17739968)
chr5 (226-275)||(39730312-39730361)
[»] chr3 (9 HSPs)
chr3 (120-362)||(39341110-39341356)
chr3 (123-276)||(42091796-42091951)
chr3 (220-308)||(54437651-54437739)
chr3 (207-276)||(46303371-46303440)
chr3 (206-288)||(34761946-34762028)
chr3 (82-183)||(54437848-54437949)
chr3 (205-262)||(31758242-31758298)
chr3 (206-260)||(54437806-54437860)
chr3 (217-274)||(48646423-48646479)
[»] chr2 (19 HSPs)
chr2 (88-288)||(13712743-13712945)
chr2 (96-308)||(9050098-9050313)
chr2 (206-322)||(16576248-16576364)
chr2 (228-340)||(2909844-2909956)
chr2 (209-308)||(16863459-16863558)
chr2 (210-322)||(34176708-34176820)
chr2 (96-258)||(38576791-38576955)
chr2 (82-321)||(16576290-16576532)
chr2 (128-185)||(38576707-38576764)
chr2 (217-294)||(38576924-38577001)
chr2 (96-166)||(9931337-9931406)
chr2 (210-279)||(35370402-35370471)
chr2 (96-180)||(25606423-25606506)
chr2 (90-310)||(34176755-34176979)
chr2 (206-285)||(28282824-28282903)
chr2 (217-260)||(34176654-34176697)
chr2 (206-295)||(25606366-25606455)
chr2 (88-181)||(28282699-28282791)
chr2 (206-310)||(35371111-35371215)
[»] chr4 (13 HSPs)
chr4 (88-264)||(25234217-25234393)
chr4 (82-279)||(25062361-25062563)
chr4 (161-276)||(15131580-15131698)
chr4 (205-321)||(22050851-22050967)
chr4 (132-346)||(53999981-54000199)
chr4 (217-308)||(20512800-20512891)
chr4 (217-303)||(11020059-11020144)
chr4 (212-275)||(4115389-4115452)
chr4 (227-288)||(25062340-25062401)
chr4 (88-181)||(55897600-55897693)
chr4 (222-264)||(54000233-54000275)
chr4 (90-183)||(22050903-22050995)
chr4 (227-287)||(46431144-46431204)
[»] chr1 (24 HSPs)
chr1 (206-287)||(10775163-10775244)
chr1 (206-279)||(46080971-46081044)
chr1 (238-308)||(7104297-7104367)
chr1 (159-276)||(7997194-7997314)
chr1 (206-276)||(34601446-34601516)
chr1 (209-323)||(52432836-52432950)
chr1 (251-307)||(7104215-7104271)
chr1 (230-321)||(3367806-3367897)
chr1 (169-258)||(44342055-44342145)
chr1 (90-183)||(3232179-3232271)
chr1 (90-175)||(7104316-7104400)
chr1 (206-289)||(12144970-12145050)
chr1 (225-302)||(15321060-15321137)
chr1 (206-259)||(42819621-42819674)
chr1 (217-273)||(52432672-52432728)
chr1 (209-346)||(34601544-34601681)
chr1 (79-168)||(49897909-49897998)
chr1 (95-168)||(67982-68054)
chr1 (206-295)||(68097-68186)
chr1 (82-141)||(68139-68198)
chr1 (227-295)||(3231979-3232047)
chr1 (206-276)||(49897870-49897940)
chr1 (227-276)||(38839666-38839715)
chr1 (217-285)||(10775028-10775096)
[»] chr6 (11 HSPs)
chr6 (124-321)||(20068000-20068200)
chr6 (206-275)||(32342600-32342669)
chr6 (175-307)||(23577118-23577252)
chr6 (226-323)||(32047194-32047291)
chr6 (209-255)||(20206481-20206527)
chr6 (209-255)||(22100504-22100550)
chr6 (207-291)||(23577009-23577093)
chr6 (128-183)||(32047262-32047317)
chr6 (248-302)||(7716732-7716786)
chr6 (99-153)||(23577068-23577121)
chr6 (134-180)||(26236751-26236797)
[»] scaffold0136 (1 HSPs)
scaffold0136 (222-308)||(36946-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (217-276)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (217-264)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 25 - 623
Target Start/End: Complemental strand, 32166890 - 32166288
Alignment:
Q  25 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  125 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 224  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  225 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaa 324  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatcttttttatcattagaa 32166592  T
Q  325 caaattacccctaatttatcaaaggataacatagaccttaccaa------tatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 418  Q
    |||||||||||||||| ||||||||||||||||| |||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166591 caaattacccctaattcatcaaaggataacataggccttaccaatgaatgtatgttgatgtgggaaccacatacatattgaaagtgtgtttagagagcat 32166492  T
Q  419 ttatgattaggatatgacattactaacattagctaagtgataaggaagtcaatgattcaattttcattcttggcaataagattaaaaacattcattctnn 518  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||      
T  32166491 ttatgattaggatatggcattactaacattagctaagtgataaggaagtcaatgattcaattttcactcttggcaataagattaaaaacattcattct-a 32166393  T
Q  519 nnnnnnnctagtaccgtagaaaaacattaaagaatcacgattttcccgactttattatattatcaaaaagtgcaacttgcatcttctttgcttttaagtt 618  Q
           ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  32166392 aaaaaaactagtaccgtataaaagcattaaagaatcacgattttcccgactttattatattatcaaaacacgcaacttgcatcttctttgcttttaagtt 32166293  T
Q  619 taacc 623  Q
    |||||    
T  32166292 taacc 32166288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 316
Target Start/End: Original strand, 33897618 - 33897847
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 187  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  188 atgtatgctcatcgatag-tttttctt-actatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 285  Q
    ||||| |||| ||||||  |||||||| |||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||||  | |||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccat 33897816  T
Q  286 ctctttcgtttcagaattgaatcttttttat 316  Q
     | |||||||||| ||| ||||||| |||||    
T  33897817 ttatttcgtttcaaaatcgaatcttatttat 33897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 96 - 308
Target Start/End: Complemental strand, 35574827 - 35574613
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 194  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  195 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 292  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || ||||||||||| || | ||||| ||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttc 35574629  T
Q  293 gtttcagaattgaatc 308  Q
    ||| || ||| |||||    
T  35574628 gttccaaaatcgaatc 35574613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 12736074 - 12736169
Alignment:
Q  226 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 321  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||| |||| |||||| ||  ||| |||||  ||| || ||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctccttttttttagaatcaaatgttatttatcatta 12736169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 29969129 - 29969186
Alignment:
Q  238 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    ||||||||||||||||||| || |||| ||||||||||| || |||||||||||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgtt 29969186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  95 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 183  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 6630603 - 6630512
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| || || | |||||| ||||||  | |||||||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcattcgttctataattgaatc 6630512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  131 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 31475059 - 31475128
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgttt 296  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||||  |||| || ||||||||||| ||||    
T  31475059 atttttatctcaagaacatcaaacttcttcatcttcttgattcacaatgtgattttcatctcttttgttt 31475128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 7405597 - 7405544
Alignment:
Q  242 acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    ||||||||| ||||||||||||  ||||||||||| || |||||||| ||||||    
T  7405597 acatcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgttcgtt 7405544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 29093581 - 29093625
Alignment:
Q  251 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    |||||||||||||| ||||||||||| || | |||||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgtt 29093625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 88 - 362
Target Start/End: Original strand, 34891414 - 34891690
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 187  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  188 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 284  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| ||||||||||| || | ||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcca 34891611  T
Q  285 tctctttcgtttcagaattgaatcttttttatcatt-agaacaaattacccctaatttatcaaaggataacatagacct 362  Q
    | |  ||||||  | ||||||||||| ||| | ||| | |  ||||||||||||||| || ||||| ||||||||||||    
T  34891612 tttgcttcgttataaaattgaatcttatttgttattgatagtaaattacccctaattcattaaagggtaacatagacct 34891690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 42012690 - 42012918
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 195  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  196 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttc 292  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  |||||||||||||| || | ||| |  |||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtgatctccatttacttc 42012886  T
Q  293 gtttcagaattgaatcttttttatcattagaa 324  Q
    |||  |||||| |||||| |||||||||||||    
T  42012887 gttcaagaattaaatcttatttatcattagaa 42012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 31171480 - 31171287
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 195  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  196 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 287  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| ||||||||| || ||  |||||||| |||| |||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcgttcaacatctaattttcatct 31171287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 276
Target Start/End: Complemental strand, 3191760 - 3191572
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 187  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  188 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgt 3191572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 31152919 - 31152725
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 195  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  196 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 287  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || ||||||||| |||| |||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacatctaattttcatct 31152725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 32138961 - 32138888
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 279  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaat 32138888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 32962455 - 32962351
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 316  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||| | || | ||| | ||| |||||| ||| ||||| | |||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttat 32962356  T
Q  317 catta 321  Q
    |||||    
T  32962355 catta 32962351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 23944096 - 23944146
Alignment:
Q  226 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgt 23944146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 34891380 - 34891435
Alignment:
Q  221 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgt 34891435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 8354444 - 8354378
Alignment:
Q  229 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||| || ||||| |||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgatattcatatctttcgtt 8354378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 22593722 - 22593597
Alignment:
Q  134 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 226  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  227 attttcatcttaagaacatcaaacttc 253  Q
    |||||||||| ||||||||||||||||    
T  22593623 attttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  103 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 198  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  199 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 261  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 353
Target Start/End: Complemental strand, 33362465 - 33362340
Alignment:
Q  228 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 327  Q
    ||||||| || |||||||||||||| || |||||||| ||||||||||| || | || |||||| |||  | ||| ||||| | |||| |||||||  ||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattagagtaa 33362366  T
Q  328 attacccctaatttatcaaaggataa 353  Q
     |||||||||| | |||||| |||||    
T  33362365 cttacccctaactcatcaaatgataa 33362340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  222 ttatcattttcatcttaagaacatcaaacttcttcatct 260  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 44755106 - 44755152
Alignment:
Q  241 aacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 287  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||    
T  44755106 aacatcaaacttcttcatatcatttgttcaacatgtaatcttcatct 44755152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaa 242  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 258  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 95 - 322
Target Start/End: Complemental strand, 7113804 - 7113573
Alignment:
Q  95 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 193  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  194 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 289  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| ||| || ||||| |      
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcatttac 7113606  T
Q  290 ttcgtttcagaattgaatcttttttatcattag 322  Q
     ||||| || |||| |||||| |||||||||||    
T  7113605 atcgttccaaaattaaatcttatttatcattag 7113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 973111 - 973226
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 305  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| |||||||||||||||||||||||||| || |||||||| ||| || || ||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattga 973210  T
Q  306 atcttttttatcatta 321  Q
    ||| | ||||||||||    
T  973211 atcatatttatcatta 973226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 14138548 - 14138660
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||||| ||||||| ||| |||| | ||| ||||     
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaatt 14138647  T
Q  309 ttttttatcatta 321  Q
     | ||||||||||    
T  14138648 atatttatcatta 14138660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 97 - 295
Target Start/End: Original strand, 40483739 - 40483939
Alignment:
Q  97 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 195  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  196 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcg 293  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| ||||||||| || | |||||| ||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcg 40483937  T
Q  294 tt 295  Q
    ||    
T  40483938 tt 40483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  95 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 183  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 2243388 - 2243321
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgt 2243321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  82 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  181 agg 183  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 22780399 - 22780323
Alignment:
Q  226 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 302  Q
    ||||||||||| || ||||  |||||||||||| ||||| ||||||||||| || |||||| ||||||||| |||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatccctttcgttttagaat 22780323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  222 ttatcattttcatcttaagaacatcaaacttcttcatct 260  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 7215522 - 7215448
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaa 301  Q
    |||||||| | |||||||| |||||| ||||| | ||| ||||||||||| || ||||||||||||||| |||||    
T  7215522 attttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaa 7215448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 41264392 - 41264462
Alignment:
Q  225 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    |||||||||||| |||||||| |||||| ||||| |  || ||||||||||| || |||||||||||||||    
T  41264392 tcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgtt 41264462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 255  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 40483703 - 40483783
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    |||||||||| || |||||||||||||||||||||  | ||||||||||| || |||||||| |||||| || ||| |||||    
T  40483703 attttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatc 40483783  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  82 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 261  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  77 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 175  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  176 catcaaggaaaaatgta 192  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 39808291 - 39808239
Alignment:
Q  222 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 274  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 7982444 - 7982353
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    |||| ||| |||||||||||| ||||||||||| ||||||  ||| ||  || ||||||| || |||||||| || |||||| |||||||||    
T  7982444 atcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctcctttgtttcataattgaatc 7982353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 7982284 - 7982214
Alignment:
Q  251 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 321  Q
    |||||||||||||| ||||||||||| || |  ||||| ||| ||||||||||||||  | ||||||||||    
T  7982284 ttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaataatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 17736829 - 17736759
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | |||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgt 17736759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 37077760 - 37077870
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 305  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || ||||||||||| || |  || || ||| ||||| ||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattga 37077859  T
Q  306 atcttttttat 316  Q
    ||||| |||||    
T  37077860 atcttatttat 37077870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 17739907 - 17739968
Alignment:
Q  247 aaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    |||||||||||||| ||| ||| ||||||| || |||||||| |||||| |||||| |||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatc 17739968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  226 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 275  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 120 - 362
Target Start/End: Original strand, 39341110 - 39341356
Alignment:
Q  120 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 216  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttat 316  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||  || | ||| |  ||||||  | ||||||||||| |||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttat 39341309  T
Q  317 cattaga-acaaattacccctaatttatcaaaggataacatagacct 362  Q
    |||||||   ||||||||||||||| |||||||| ||||||||||||    
T  39341310 cattagaggtaaattacccctaattcatcaaagggtaacatagacct 39341356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 42091951 - 42091796
Alignment:
Q  123 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 220  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  221 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| |||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgt 42091796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 54437651 - 54437739
Alignment:
Q  220 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||||  ||||||||||||||| ||||||| ||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctctttcgttccagaatttaatc 54437739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 46303371 - 46303440
Alignment:
Q  207 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgt 46303440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 34762028 - 34761946
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 288  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | ||||||||| || ||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctc 34761946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  82 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  181 agg 183  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  205 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 262  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 260  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 48646423 - 48646479
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 274  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 288
Target Start/End: Complemental strand, 13712945 - 13712743
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 186  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  187 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttca 284  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||| |||| | ||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctcca 13712747  T
Q  285 tctc 288  Q
    ||||    
T  13712746 tctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 96 - 308
Target Start/End: Complemental strand, 9050313 - 9050098
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 194  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  195 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 291  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||| | || | |||||| ||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T
Q  292 cgtttcagaattgaatc 308  Q
    |||| || ||| |||||    
T  9050114 cgttacaaaatcgaatc 9050098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 16576248 - 16576364
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 305  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| || | | |||| |||||| |||||| ||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcga 16576347  T
Q  306 atcttttttatcattag 322  Q
    ||| |  ||||||||||    
T  16576348 atcatacttatcattag 16576364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 2909844 - 2909956
Alignment:
Q  228 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaacaa 327  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||| |  ||| ||  | ||||||||||| ||||||||||| | ||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttatttatcattaggataa 2909943  T
Q  328 attacccctaatt 340  Q
     | ||||||||||    
T  2909944 ctgacccctaatt 2909956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 16863459 - 16863558
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| |||| || | |||||| ||||||  ||||| |||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatc 16863558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 34176708 - 34176820
Alignment:
Q  210 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatct 309  Q
    |||||| |||| |||  ||| ||| |||| |||||||||| |||||||||||||| ||| ||||| | || |||||||||||||||||| ||| |||||     
T  34176708 tcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatca 34176807  T
Q  310 tttttatcattag 322  Q
    | ||| |||||||    
T  34176808 tatttttcattag 34176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 194  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  195 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 258  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 321
Target Start/End: Original strand, 16576290 - 16576532
Alignment:
Q  82 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  181 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||     
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgc 16576487  T
Q  277 aatgttcatctctttcgtttcagaattgaatcttttttatcatta 321  Q
    ||| | |||||  |||||| ||  |||||||| | ||| ||||||    
T  16576488 aatctccatcttcttcgttacattattgaatcatatttgtcatta 16576532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  128 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 185  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 38577001 - 38576924
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgt 294  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || ||||||||||| || | ||||||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcgt 38576924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 166  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 35370402 - 35370471
Alignment:
Q  210 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 279  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| ||||||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaat 35370471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  96 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 34176755 - 34176979
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaat 189  Q
    |||| ||||||||||||| |||| | ||||||||| |||| || ||||||||| || || |||||||   | ||||| |||||||||||||  | |||||    
T  34176755 atctccttcatttaacatatgatcttcatctcttt-cgtttcataatcgaatcatatttttcattaggattgaattatccccaattcatcattggaaaat 34176853  T
Q  190 gtatgc-tcatcgatag---tttttct---tactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgtt 282  Q
     || || |||| |||||   |||||||   ||| || | ||| ||||||||||| ||||||  ||||||| | ||||| ||| ||||||||||| || ||    
T  34176854 ctaggcatcattgataggattttttctccttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgatatt 34176951  T
Q  283 catctctttcgtttcagaattgaatctt 310  Q
    ||||   ||| |||||||||||||||||    
T  34176952 catcctcttcatttcagaattgaatctt 34176979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 28282824 - 28282903
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 285  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| ||||| | |||   |||||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcatttgcttcgctcaacatgtaatcttcat 28282903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatct 260  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 25606366 - 25606455
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || ||||||||| | || | |||||| ||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgtt 25606455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 35371111 - 35371215
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattga 305  Q
    ||||| |||| |||| ||| ||||||||| | ||||||||||||||||||  |  |||| ||| ||||||| || | |||||| || |||| | ||||||    
T  35371111 ttttttttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattga 35371210  T
Q  306 atctt 310  Q
    |||||    
T  35371211 atctt 35371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 187  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  188 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 264  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 279
Target Start/End: Original strand, 25062361 - 25062563
Alignment:
Q  82 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  181 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 275  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| ||||||||||||||||| |||  |||||| ||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttg 25062559  T
Q  276 taat 279  Q
    ||||    
T  25062560 taat 25062563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 15131698 - 15131580
Alignment:
Q  161 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 257  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  258 tctcctttattcaacatgt 276  Q
    ||||||| ||||| |||||    
T  15131598 tctccttcattcagcatgt 15131580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 22050851 - 22050967
Alignment:
Q  205 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattg 304  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| ||||||||||| || |||||||| ||| ||||||||| |    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcg 22050950  T
Q  305 aatcttttttatcatta 321  Q
    |||| | ||||||||||    
T  22050951 aatcatatttatcatta 22050967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 346
Target Start/End: Complemental strand, 54000199 - 53999981
Alignment:
Q  132 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 228  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  229 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattagaac-aa 327  Q
    |||||||| ||||||||||||    |||||| | |||||||||||||| || | ||| |  ||||||| | |||| |||||| |||||| ||||  | ||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccatttacttcgttttaaaattaaatcttatttatctttagggctaa 54000000  T
Q  328 attacccctaatttatcaa 346  Q
    |||||| |||||| |||||    
T  53999999 attacctctaattcatcaa 53999981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 20512891 - 20512800
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||||| | ||| || ||||||||| ||| |||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatc 20512800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 11020144 - 11020059
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaatt 303  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| ||||||| || | |||||||||||||||| ||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacctttt-atctcctttatttaacatgtgatttgcatctctttcgtttcaaaatt 11020059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  212 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 275  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctc 288  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| ||||||| || ||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  88 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 181  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 54000275 - 54000233
Alignment:
Q  222 ttatcattttcatcttaagaacatcaaacttcttcatctcctt 264  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctcctt 54000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 183  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 46431204 - 46431144
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 287  Q
    ||||| |||| || |||||||||||||||||||| |||  ||||||| ||||| |||||||    
T  46431204 atttttatctcaataacatcaaacttcttcatcttcttagttcaacacgtaatcttcatct 46431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 10775163 - 10775244
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatct 287  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 46080971 - 46081044
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaat 279  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | ||||||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaat 46081044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 7104297 - 7104367
Alignment:
Q  238 aagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  7104297 aagaatattaaatttcttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatc 7104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 7997314 - 7997194
Alignment:
Q  159 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 255  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  256 catctcctttattcaacatgt 276  Q
    ||| || || |||||||||||    
T  7997214 catttctttcattcaacatgt 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 34601516 - 34601446
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgt 34601446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 52432836 - 52432950
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||||| || | ||||||||||| ||| || |||||||||||||||||| | ||| |||| ||||||||| || ||||||||||||||| |||  ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgtaatttttatctctttcgtttcataatcaaatc 52432935  T
Q  309 ttttttatcattaga 323  Q
     | ||| ||||||||    
T  52432936 atatttgtcattaga 52432950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 7104215 - 7104271
Alignment:
Q  251 ttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaat 307  Q
    |||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  7104215 ttcttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 3367806 - 3367897
Alignment:
Q  230 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcatta 321  Q
    ||||||| |||||||||||| || |||||||| || ||||||||||| || | ||||||||||||| |||||||  ||| | ||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcatta 3367897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  169 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 258  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 183  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  90 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 175  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 12144970 - 12145050
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctct 289  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || ||||||||||| || |||||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctct 12145050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 15321060 - 15321137
Alignment:
Q  225 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 302  Q
    |||||||| ||| || ||||| ||| || ||||| ||||| |||||||||||||| |||||||||||| |||||||||    
T  15321060 tcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctctttcatttcagaat 15321137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 259  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 52432672 - 52432728
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaaca 273  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| ||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaaca 52432728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 34601681 - 34601544
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    ||||||| || | |||| |||||||||| || |||||||||| | ||||||| ||| ||||||||||| || |||||||| ||| ||  | ||| |||||    
T  34601681 ttcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacatgtgatattcatctccttccttataaaatcgaatc 34601583  T
Q  309 ttttttatcattaga-acaaattacccctaatttatcaa 346  Q
     |  || |||||||| |||||||||| ||||||||||||    
T  34601582 atagttgtcattagagacaaattacctctaatttatcaa 34601544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  79 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 168  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  95 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 168  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 68097 - 68186
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| ||||||| || | ||||| |||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgtt 68186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  82 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 141  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 3231979 - 3232047
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtt 295  Q
    |||||||||| ||||||| ||||||||||||| || || ||||||||||| || |||| ||| ||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattcacctccttcgtt 3232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 49897870 - 49897940
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgt 49897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 38839715 - 38839666
Alignment:
Q  227 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| ||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgt 38839666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 10775028 - 10775096
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcat 285  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || ||||||||||| || |||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcat 10775096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 321
Target Start/End: Original strand, 20068000 - 20068200
Alignment:
Q  124 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 219  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  220 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcat 319  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || ||||||||||| || || ||||  |||  ||||||||  ||||||  |||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgtcatctttatcttcttcagttcagaataaaatcttacttatcat 20068198  T
Q  320 ta 321  Q
    ||    
T  20068199 ta 20068200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  206 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 275  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 23577118 - 23577252
Alignment:
Q  175 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 272  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  273 atgtaatgttcatctctttcgtttcagaattgaat 307  Q
    || | || | ||| |  ||||||||| ||||||||    
T  23577218 atctgatatacatttacttcgtttcaaaattgaat 23577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 32047194 - 32047291
Alignment:
Q  226 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatcttttttatcattaga 323  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||| | || ||| |||  ||| || || ||||||||| |  |||||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattaga 32047291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 255  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  209 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 255  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 23577009 - 23577093
Alignment:
Q  207 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtaatgttcatctcttt 291  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||| || |||| || | |||||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatttaagatgttatttacatctcttt 23577093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  128 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 183  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 7716786 - 7716732
Alignment:
Q  248 aacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaat 302  Q
    ||||| ||||| ||||| |||||||||||||| |||||||| ||||||| |||||    
T  7716786 aactttttcatttccttcattcaacatgtaattttcatctcattcgttttagaat 7716732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  99 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 153  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  134 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 180  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 37033 - 36946
Alignment:
Q  222 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtaatgttcatctctttcgtttcagaattgaatc 308  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||| || |||||||| || |||||| ||| |||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatc 36946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 794 - 853
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 276  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  217 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 264  Q
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T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

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