View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_5 (Length: 478)
Name: NF21110_low_5
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 27 - 344
Target Start/End: Complemental strand, 54472399 - 54472082
Alignment:
| Q |
27 |
attaattaattaacttcctccattaactattctaaacttcataacatgcttatttgcaaattcctattnnnnnnngaaataggagatatataaaaatata |
126 |
Q |
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| T |
54472399 |
attaattaattagcttcccccattaactattctaaacttcataacatgcttatttgcaaattcctattaaaaaaagaaataggagatatataaaaatata |
54472300 |
T |
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| Q |
127 |
taccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgtacatataacgcagagtaggataatgacaaggaggat |
226 |
Q |
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| T |
54472299 |
taccgtgtgctggagtagggtagtaatgaatgtgatgaggttgtgatctcttcttccttcttgtacatataacgcagagtaggataatgacaaggaggat |
54472200 |
T |
|
| Q |
227 |
tatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcatttgtattgttgccgttgttcgagggtgatgattta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472199 |
tatacaagctgcacctgcaactgctattataccacccacgctcaattgattcccattgttatcatttgtattgttgccgttgttcgagggtgatgattta |
54472100 |
T |
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| Q |
327 |
tgatgatgatgtgacgtc |
344 |
Q |
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| T |
54472099 |
tgatgatgatgtgacgtc |
54472082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 54472059 - 54472003
Alignment:
| Q |
370 |
aaaagacaccctggttcggaggcaatggtgagttgttaggtggagcctgtgatgact |
426 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54472059 |
aaaagacaccctggtttggaggcaatggtgagttgttaggtggagcctgtgatgact |
54472003 |
T |
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