View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_6 (Length: 446)
Name: NF21110_low_6
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_6 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Complemental strand, 44476581 - 44476173
Alignment:
| Q |
23 |
atttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccatttctcaaggcgaagaattacaaaccttgcttagtgctgt |
122 |
Q |
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| T |
44476581 |
atttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccatttctcaaggcgaagaattacaaaccttgcttagtgctgt |
44476482 |
T |
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| Q |
123 |
tttaacaaaccaacaaacttgtttagatggtttagttactgcatcttctgatcaaacggtgattaatgatttttcatcaacaatttccgatgatacaaag |
222 |
Q |
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| T |
44476481 |
tttaacaaaccaacaaacttgtttagatggtttagttactgcatcttctgatcaaacggtgattaatgatttttcatcaacaatttccgatgatacaaag |
44476382 |
T |
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| Q |
223 |
attcatagtgtgtcccttgctctatttttaaagggttgggttggtgacaagaaaaaacaaacatcatggccacaaaatggaagacatttgaattttcaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44476381 |
attcatagtgtgtcccttgctctatttttaaagggttgggttggtgacaagaaaaaacaaacatcatggccacaaaatggaagacatttgaattttcaca |
44476282 |
T |
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| Q |
323 |
acggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctagaaatcgaaatgggcgaaagttacttcaaacaattgatgaaag |
422 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44476281 |
acggtcatttacctttcaaaatgtcagataaagtgcgtgctatttatgattcagctagaaatcgacatgggcgaaagttacttcaaacaattgatgaaag |
44476182 |
T |
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| Q |
423 |
tgttactgt |
431 |
Q |
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| T |
44476181 |
tgttactgt |
44476173 |
T |
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Target: scaffold0458 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 3436 - 3337
Alignment:
| Q |
282 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
381 |
Q |
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| T |
3436 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
3337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 39450185 - 39450284
Alignment:
| Q |
282 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
381 |
Q |
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| T |
39450185 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
39450284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 39471057 - 39471156
Alignment:
| Q |
282 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
381 |
Q |
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||||||||||||||||||||||| ||||||||||| | || |||| ||| || ||||| |||||| |||||| ||||||||||||||||| |||||| |
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| T |
39471057 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
39471156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 381
Target Start/End: Complemental strand, 24062070 - 24061975
Alignment:
| Q |
286 |
tcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
381 |
Q |
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| T |
24062070 |
tcatggccacaaaaagggagacatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgcgctatttatgattcagctaga |
24061975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 37166677 - 37166625
Alignment:
| Q |
103 |
caaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggttt |
155 |
Q |
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| T |
37166677 |
caaacattgcttagtgctgttttaactaatcatcaaacatgtttagatggttt |
37166625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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