View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21110_low_7 (Length: 439)

Name: NF21110_low_7
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21110_low_7
NF21110_low_7
[»] chr3 (8 HSPs)
chr3 (17-431)||(5333418-5333832)
chr3 (17-431)||(29518235-29518653)
chr3 (17-237)||(12835925-12836156)
chr3 (268-431)||(12836149-12836310)
chr3 (132-245)||(45335045-45335158)
chr3 (104-197)||(38274365-38274462)
chr3 (356-431)||(20176322-20176397)
chr3 (127-165)||(45335161-45335199)
[»] chr8 (6 HSPs)
chr8 (268-431)||(21116756-21116917)
chr8 (17-234)||(10626087-10626315)
chr8 (17-237)||(21116910-21117141)
chr8 (268-431)||(10625930-10626091)
chr8 (43-123)||(19512069-19512153)
chr8 (45-123)||(35339057-35339139)
[»] chr4 (4 HSPs)
chr4 (17-235)||(1239992-1240221)
chr4 (268-431)||(1239836-1239997)
chr4 (43-123)||(18368486-18368570)
chr4 (43-123)||(36594353-36594437)
[»] chr7 (1 HSPs)
chr7 (34-118)||(45805179-45805267)
[»] chr1 (1 HSPs)
chr1 (41-123)||(42599855-42599941)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 5333418 - 5333832
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5333418 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 5333517  T
Q  117 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333518 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagac 5333617  T
Q  217 atacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgttgaacaattgcttgtatgtttatttacatgatattgctgaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  5333618 atacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttatatgtttatttacatgatgttgctgaag 5333717  T
Q  317 aattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatatt 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333718 aattgatattgataaagccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatatt 5333817  T
Q  417 gaaaaaagtgatgat 431  Q
    |||||||||||||||    
T  5333818 gaaaaaagtgatgat 5333832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 29518653 - 29518235
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29518653 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 29518554  T
Q  117 atgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgatt 212  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29518553 atgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgatt 29518454  T
Q  213 agacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgttgaacaattgcttgtatgtttatttacatgatattgct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  29518453 agacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttgtatgtttatttacatgatgttgct 29518354  T
Q  313 gaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccga 412  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  29518353 gaagaattgatattgataaagccttttattttcctcttatcgagtatcgtgtttttaagttttattgttactttgtatgataggttataactagaaccaa 29518254  T
Q  413 tattgaaaaaagtgatgat 431  Q
    |||||||||||||||||||    
T  29518253 tattgaaaaaagtgatgat 29518235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 12835925 - 12836156
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 112  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  12835925 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 12836024  T
Q  113 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 205  Q
    ||||||| |||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  12836025 cgccatgcctaatgagaggaagcgtggatgggtacttaggctctaaggatataacatgtatttgtttaggttctagtgatgagacatacttatcatcttt 12836124  T
Q  206 agtgattagacatacttatcgtagtatttgtt 237  Q
    |||||| | ||||||||||| |||||||||||    
T  12836125 agtgatcaaacatacttatcttagtatttgtt 12836156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 268 - 431
Target Start/End: Original strand, 12836149 - 12836310
Alignment:
Q  268 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 367  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12836149 tatttgttgaacaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 12836246  T
Q  368 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 431  Q
    ||||||||||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||||    
T  12836247 taagttttattgttactttgtatgacaagttataactataactgatattgaaaaaagtgatgat 12836310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 45335158 - 45335045
Alignment:
Q  132 gtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagacatacttatcgtagta 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  45335158 gtggatgggtacttaggctctaaggatataacttgaatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta 45335059  T
Q  232 tttgtttaggttcc 245  Q
    ||||||||||||||    
T  45335058 tttgtttaggttcc 45335045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 38274462 - 38274365
Alignment:
Q  104 aatgtttatcgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 197  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38274462 aatgtttatcgccatgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 38274365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 20176397 - 20176322
Alignment:
Q  356 gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20176397 gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 20176322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 45335199 - 45335161
Alignment:
Q  127 gaagcgtggatgggtacttaggctctaaggatataactt 165  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45335199 gaagcgtggatgggtacttaggctttaaggatataactt 45335161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 21116917 - 21116756
Alignment:
Q  268 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 367  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21116917 tatttgttgaacaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 21116820  T
Q  368 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 431  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  21116819 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 21116756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 10626315 - 10626087
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 112  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||  |||||||||    
T  10626315 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggaggtaaatgtttat 10626216  T
Q  113 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 205  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  10626215 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 10626116  T
Q  206 agtgattagacatacttatcgtagtattt 234  Q
    ||||||| |||||||||||| ||||||||    
T  10626115 agtgatttgacatacttatcttagtattt 10626087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 21117141 - 21116910
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 112  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||     |||||||| |||||||||    
T  21117141 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgaaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 21117042  T
Q  113 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 205  Q
    ||||||| |||    |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  21117041 cgccatgcctaatgagaggaagcgtggatggatgcttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 21116942  T
Q  206 agtgattagacatacttatcgtagtatttgtt 237  Q
    |||||| ||||||||||||| |||||||||||    
T  21116941 agtgatcagacatacttatcttagtatttgtt 21116910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 10626091 - 10625930
Alignment:
Q  268 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 367  Q
    ||||| |||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10626091 tattttttgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 10625994  T
Q  368 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 431  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  10625993 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 10625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 19512153 - 19512069
Alignment:
Q  43 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 123  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  19512153 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 19512069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 35339057 - 35339139
Alignment:
Q  45 agacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 123  Q
    |||||||||||||||    || || ||||||||||| |||||||||||||    |||||||| ||||||| ||||||||||||    
T  35339057 agacatttcagatgacatctacgggaaagccttggagaagtttaaggatccagattggagggaaatgtttgtcgccatgtcta 35339139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 1240221 - 1239992
Alignment:
Q  17 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 112  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  1240221 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 1240122  T
Q  113 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 205  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  1240121 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 1240022  T
Q  206 agtgattagacatacttatcgtagtatttg 235  Q
    ||||||  |||||||||||| |||||||||    
T  1240021 agtgatcggacatacttatcttagtatttg 1239992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 1239997 - 1239836
Alignment:
Q  268 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 367  Q
    |||||| ||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1239997 tatttgctgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 1239900  T
Q  368 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 431  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  1239899 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 1239836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 18368486 - 18368570
Alignment:
Q  43 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 123  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  18368486 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 18368570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 36594437 - 36594353
Alignment:
Q  43 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 123  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  36594437 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 36594353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 45805267 - 45805179
Alignment:
Q  34 gatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccat 118  Q
    ||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||    |||||||| ||||||||| |||||    
T  45805267 gatgaactagaagacatttcacatgatgcctatgaaaaaaccttggaaaagtttaaggatcctgattggagggaaatgtttatggccat 45805179  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 42599941 - 42599855
Alignment:
Q  41 tagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 123  Q
    |||||||||||||||||||    |  ||||||||||||||||||||||||||||    |||||||| ||||||||| ||||||||||    
T  42599941 tagaagacatttcagatgacatcttcggaaaagccttggaaaagtttaaggatcctgattggagggaaatgtttatggccatgtcta 42599855  T

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