View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_8 (Length: 434)
Name: NF21110_low_8
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 40848551 - 40848862
Alignment:
| Q |
1 |
aaaatatactcttctttcacggtaacgtatctaattagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgannnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40848551 |
aaaatatactcttctttcacggtaacgtatctatttagttgaattatttcgtaacttttcatttgcattcgtagatttgcatggtataaatgattttttt |
40848650 |
T |
|
| Q |
101 |
nnnnnnnngttctggagggacatttgaatcattctcatcattttcttccgttttcttctaaaacactctatagctcatttggtgctttccccttttcccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
40848651 |
ttgtttttgttctggagggacatttgaatcattctcatcattttcttccgtttccttctaaaactctctatagctcatttggctgtttccc-ttttccca |
40848749 |
T |
|
| Q |
201 |
gtgttatgtctattaatcataaactgagtgcacctcattcatttattgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40848750 |
ttgttatgtctattaatcataaactgagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatac |
40848848 |
T |
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| Q |
301 |
tccttttatataag |
314 |
Q |
| |
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|||||||||||||| |
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| T |
40848849 |
tccttttatataag |
40848862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 40848915 - 40848965
Alignment:
| Q |
367 |
ttagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgat |
417 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40848915 |
ttagttagtgagccttaatcttattcattgcctatagtgtatctcgttgat |
40848965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8131940 - 8131902
Alignment:
| Q |
1 |
aaaatatactcttctttcacggtaacgtatctaattagt |
39 |
Q |
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|||||||||||| ||||||||||||| |||||||||||| |
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| T |
8131940 |
aaaatatactctactttcacggtaacatatctaattagt |
8131902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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