View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_9 (Length: 404)
Name: NF21110_low_9
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 9685263 - 9685633
Alignment:
| Q |
16 |
atgccaaatgactggctctaagagtaacatggaatcgcagaaactaccacctcaagaacattggtaattataagataacaaatcaccatccataattcaa |
115 |
Q |
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| T |
9685263 |
atgccaaatgactggctctaagagtaacatggaatcgcagaaactaccacctccagaacattggtaattatcagataacaaatcaccatccataattcaa |
9685362 |
T |
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| Q |
116 |
gtcaacagtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacataatcatattatacatacaccttattattctataataatcagat |
215 |
Q |
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| T |
9685363 |
gtcaacagtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacataatcatattatacatacaccttattattctataataatcagat |
9685462 |
T |
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| Q |
216 |
agaacaatcaaacaaacaatggcatataaatttcctacattgctatgcaaaaatgaatcaaacaacatataaagtaaataaattctcactagcaaataga |
315 |
Q |
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| T |
9685463 |
agaacaatcaaacaaacaatggcatataaatttcctacattgctatgcaaaaatgaatcaaacaacatataaagtaaataaattctcactagcaaataga |
9685562 |
T |
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| Q |
316 |
aatggtaaatacgcttttatctttgacggcaaaccaatcttctccaagtaactaacaaacgaactctccat |
386 |
Q |
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| T |
9685563 |
aatggtaaatacgcttttatctttgacggcaaaccaagcttctccaagtaactaacaaacgaactctccat |
9685633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 10104304 - 10104231
Alignment:
| Q |
102 |
catccataattcaagtcaaca---gtcaatgaagttatgcaatcatctcaaaactaacacattaacataaacat |
172 |
Q |
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| T |
10104304 |
catctataaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaatacattagcataaacat |
10104231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 10107784 - 10107712
Alignment:
| Q |
102 |
catccataattcaagtcaaca---gtcaatgaagttatgcaatcatctcaaaactaacacattaacataaaca |
171 |
Q |
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|||| |||| ||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||| |
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| T |
10107784 |
catctataaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaatacattagcataaaca |
10107712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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