View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21111_high_1 (Length: 676)
Name: NF21111_high_1
Description: NF21111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21111_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 6 - 568
Target Start/End: Complemental strand, 11248244 - 11247670
Alignment:
| Q |
6 |
atggacatcatcacaaggagtccaaacagtgctctcaaaattcataacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatg |
105 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11248244 |
atggccatcatcacaaggagttcaaacagtgctctcaaaattcagaacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatg |
11248145 |
T |
|
| Q |
106 |
aatgaaagggttctaaaggccaaagagaaactgaagatacaaaggcatgacaacaaagagaaagagatggcaatgctgatgttccaatatctttatgaag |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11248144 |
aaagaaagggttctaaaggccaaagagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatctttatgaag |
11248045 |
T |
|
| Q |
206 |
gtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11248044 |
gtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaaga |
11247945 |
T |
|
| Q |
306 |
ggataataatgg------------tcaattccaaatggcaccaccattgacatccatgaatgaagaaatggcaaggatgggtcatggccatgctgggatg |
393 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11247944 |
ggataataatggtcaacatgaaattcaattccaaatggcaccaccattgacatccaggaacgaagaaatggcaaggatgggtcatggccatgctgggatg |
11247845 |
T |
|
| Q |
394 |
actgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggtaatggagatgagacagttccatttggtgaggtcgatccta |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11247844 |
actgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggtaatggagatgagacagttccatttggcgaggtcgatccta |
11247745 |
T |
|
| Q |
494 |
gatttttgcccaatataatgccttgaatgaatgcaggtatttgttttgcaaaccctttgaggtggatctatcata |
568 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11247744 |
gatttttgcccaatataatgccttgaatgaaatcaggtatttgttttgcaaaccctttgaggtggatctatcata |
11247670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 9895178 - 9894890
Alignment:
| Q |
11 |
catcatcacaaggagtccaaacagtgctctcaaaa-ttcataacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatgaatg |
109 |
Q |
| |
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||||| |||| |||||||||||||||||||||||| |||| ||||||| |||| |||| |||||| |||||||| |||| ||||| || ||||||| |
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| T |
9895178 |
catcaccacagggagtccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatgatgaaccaagagacttatatgatac |
9895079 |
T |
|
| Q |
110 |
aaagggttctaaaggccaaagagaaactgaagatacaaaggcatgacaacaaagagaaagagatggcaatgctgatgttccaatatctttatgaaggtaa |
209 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||||||| ||| | ||||||||||||| ||||| ||||| |||| ||||| |||||| || |
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| T |
9895078 |
aaagggttctgaaggccaaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtctttgtgaaggcaa |
9894979 |
T |
|
| Q |
210 |
ctttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttgattgaccagaaattgaaggaggttggtagaaggttgg |
298 |
Q |
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|| ||||||| |||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||| |
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| T |
9894978 |
attaatgcagaataatatctccttggttgattcaaaacatctttgttggttgattgaccaaaaatggaaggacgttagtagaaggttgg |
9894890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 332 - 568
Target Start/End: Original strand, 11108659 - 11108895
Alignment:
| Q |
332 |
caccaccattgacatccatgaatgaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaactttt |
431 |
Q |
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|||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| || || ||||||||| || |||||||| |||| ||| |
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| T |
11108659 |
caccaccatttacatccagtaatgaagaaatggcaatgatgggtcctggccatgctggaatacctatgaataatgacgacgacattgaaattcaatcttt |
11108758 |
T |
|
| Q |
432 |
gatgggcttgatgatgaatggtaatggagatgagacagttccatttggtgaggtcgatcctagatttttgcccaatataatgccttgaatgaatgcaggt |
531 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||| |||||||| || ||||||||||| ||||||| ||| || | |||| ||||||| || || |
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| T |
11108759 |
catgggcttgatgatgaatagtaatggagatgagtcagtgccatttggcgaagtcgatcctagggttttgccaaatctactaccttaaatgaattcatgt |
11108858 |
T |
|
| Q |
532 |
atttgttttgcaaaccctttgaggtggatctatcata |
568 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||| |
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| T |
11108859 |
atttgttttgcttgccctttgtgatggatctatcata |
11108895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 11108554 - 11108660
Alignment:
| Q |
163 |
gagaaagagatggcaatgctgatgttccaatatctttatgaaggtaactttatgcagagtaatatgtcattggttgattcaaaacatctttgttggttga |
262 |
Q |
| |
|
||||| |||||| ||||||| ||| |||| ||||| |||| | || |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
11108554 |
gagaaggagatgacaatgctcatgaatcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttttttggttga |
11108653 |
T |
|
| Q |
263 |
ttgacca |
269 |
Q |
| |
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|||||| |
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| T |
11108654 |
ctgacca |
11108660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 9894892 - 9894788
Alignment:
| Q |
329 |
tggcaccaccattgacatccatgaatgaagaaa--tggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaa |
426 |
Q |
| |
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||||||||||||||||||| | | ||||| ||| |||||| ||||||||||||| ||| |||||||||| |||| |||||||| ||||| ||||||||| |
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| T |
9894892 |
tggcaccaccattgacatctagggatgaaaaaaaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaagtcaa |
9894793 |
T |
|
| Q |
427 |
ctttt |
431 |
Q |
| |
|
|||| |
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|
| T |
9894792 |
atttt |
9894788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 612 - 659
Target Start/End: Complemental strand, 11247625 - 11247578
Alignment:
| Q |
612 |
ttaggtatgttaaacacaatctcaagtcattattctctgtctaatcat |
659 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
11247625 |
ttaggtatgttaaacacaacctcaagtcattattctttgtctaatcat |
11247578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 13308585 - 13308651
Alignment:
| Q |
255 |
ttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaagaggataataatggtcaa |
321 |
Q |
| |
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||||||||||||||| || |||||||| |||| |||||||||| || || ||| |||||||||||| |
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| T |
13308585 |
ttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaa |
13308651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 480
Target Start/End: Original strand, 13308724 - 13308849
Alignment:
| Q |
355 |
gaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggta |
454 |
Q |
| |
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||||||||||||| |||||| |||| |||| |||||| ||| ||| |||||||| ||||| |||| ||| | || ||| ||||||||||||| || |
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| T |
13308724 |
gaagaaatggcaatgatgggccatgaccattttgggataactatgagcaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgata |
13308823 |
T |
|
| Q |
455 |
atggagatgagacagttccatttggt |
480 |
Q |
| |
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|| ||||||||| || ||||||||| |
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| T |
13308824 |
atagagatgagaatgtcccatttggt |
13308849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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