View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21111_high_2 (Length: 436)
Name: NF21111_high_2
Description: NF21111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21111_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 28209732 - 28210139
Alignment:
| Q |
19 |
catacaaaagttttaactcttcattcttgtttgagaatcttaaacccaaatttattattgcatccattttttgtgagctagaatccacttgtaactttgt |
118 |
Q |
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| T |
28209732 |
catacaaaagttttaactcttcattcttgtttgagaatcttaaacccagatttattattgcatccattttttgtgagctagaatccacttgtaactttgt |
28209831 |
T |
|
| Q |
119 |
catgttgaatgtcctcacattgactttgggcatccctgctttgaggaaagccaaataggatatccctaaaaagagaaaaactatgacaaatataaaaata |
218 |
Q |
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| T |
28209832 |
catgttgaatgtcctcacattgactttgggcatccctgctttgaggaaagccaaataggatatccccaaaaagagaaaaactatgacaaatataaaaata |
28209931 |
T |
|
| Q |
219 |
gcaagacatgaccatgcacaacatgccaaaaaacatggattgtggtgtcccttgtcaaaatcatcaatggaggtgtcaatattgttgtcgaggccagagg |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209932 |
gcaagacatgaccatgcacaacatgctaaaaaacatggattgtggtgtcccttgtcaaaatcatcaatggaggtgtcaatattgttgtcgaggccagagg |
28210031 |
T |
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| Q |
319 |
aatggctttggtggttgtggccagaaggcacttcgaaggctacacgacgacctgatttgcgacaactgttggtggatgaattcttcaccaacacaggttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28210032 |
aatggctttggtggttgtggccagaaggcacttcgaaggctacacgacgacctgatttgcgacaactgttggtggatgaattcttcaccaacacaggttt |
28210131 |
T |
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| Q |
419 |
gctctctg |
426 |
Q |
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| T |
28210132 |
gctctctg |
28210139 |
T |
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