View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21111_high_4 (Length: 229)
Name: NF21111_high_4
Description: NF21111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21111_high_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9895162 - 9894933
Alignment:
| Q |
1 |
ccaaacagtgctctcaaaa-ttcagagcaatgtctgagtgggagaagagtcagaaaatgatgaaccaagagacttatatgatacaaagggttctgaaggc |
99 |
Q |
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| T |
9895162 |
ccaaacagtgctctcaaaaattcagaacaatgtctgagtgggagaagagccagaaaatgatgaaccaagagacttatatgatacaaagggttctgaaggc |
9895063 |
T |
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| Q |
100 |
caaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtctttgtgaaggcaaattagtgcagaataat |
199 |
Q |
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| T |
9895062 |
caaagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctcatgtttcaatgtctttgtgaaggcaaattaatgcagaataat |
9894963 |
T |
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| Q |
200 |
atctccttggttgattcaaaacatctttgt |
229 |
Q |
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| T |
9894962 |
atctccttggttgattcaaaacatctttgt |
9894933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 11248222 - 11247995
Alignment:
| Q |
2 |
caaacagtgctctcaaaattcagagcaatgtctgagtgggagaagagtcagaaaatgatgaaccaagagacttatatgatacaaagggttctgaaggcca |
101 |
Q |
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| T |
11248222 |
caaacagtgctctcaaaattcagaacaatgactgaaagggataagagcaagaaaatggtgaatcaagaaacatatatgaaagaaagggttctaaaggcca |
11248123 |
T |
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| Q |
102 |
aagagaaactgaagacacaaaggcatgaaaactatgagaaagagatggttatgctaatgtttcaatgtctttgtgaaggcaaattagtgcagaataatat |
201 |
Q |
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| T |
11248122 |
aagagaaactgaagatgcaaaggcatgacaacaaagagaaagagatggcaatgctgatgtttcaatatctttatgaaggtaactttatgcagagtaatat |
11248023 |
T |
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| Q |
202 |
ctccttggttgattcaaaacatctttgt |
229 |
Q |
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| T |
11248022 |
gtcattggttgattcaaaacatctttgt |
11247995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 11108580 - 11108644
Alignment:
| Q |
163 |
tcaatgtctttgtgaaggcaaattagtgcagaataatatctccttggttgattcaaaacatcttt |
227 |
Q |
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| T |
11108580 |
tcaatgtctttttgaaagcaaatttatgcagaataatatgtcattggttgattcaaaacatcttt |
11108644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 11106708 - 11106780
Alignment:
| Q |
51 |
agaaaatgatgaaccaagagacttatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaag |
123 |
Q |
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| T |
11106708 |
agaaaatgatgaaccaagagactttcttggcacaaagggttctgaaggctgaagagaaattgatgaaacaaag |
11106780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 10986998 - 10987070
Alignment:
| Q |
51 |
agaaaatgatgaaccaagagacttatatgatacaaagggttctgaaggccaaagagaaactgaagacacaaag |
123 |
Q |
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| T |
10986998 |
agaaaatgatgaaccaagaaactttcttgacacaaagtgttttgaaggctgaagagaaactaaagaaacaaag |
10987070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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