View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21112_high_6 (Length: 335)
Name: NF21112_high_6
Description: NF21112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21112_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 58 - 322
Target Start/End: Complemental strand, 37443570 - 37443306
Alignment:
| Q |
58 |
gcaacttgtattcgtattaatgagtgttgataaaagctacaattttaaatgccattattgataagcaggtggaacaaaatgtgttttttgcaacaatggc |
157 |
Q |
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| T |
37443570 |
gcaacttgtattcgtattaatgagtgttgataaaagctacaattttaaatgccattattgataagcaggtggaacaaaatgtgttttttgcaacaacggc |
37443471 |
T |
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| Q |
158 |
aagatgaaaaaagagatggggttggttgactgcaaagtatgcaagggttcaggtatctctttatgtcattatcacttatatacaaaaattgttattggac |
257 |
Q |
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| T |
37443470 |
aagatgaaaaaagagatggggttggttgactgcaaagtatgcaagggttcaggtatctctttatgtcattatcacttatatacaaaaattgttattggac |
37443371 |
T |
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| Q |
258 |
atctagcgaaattgcatttattttgcattcttgatttaatatgaataatttgggttgtgcttctc |
322 |
Q |
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| T |
37443370 |
atctagcaaaattgcatttattttgcattcttgatttaatatgaataatttgggttgtgcttctc |
37443306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 96 - 322
Target Start/End: Complemental strand, 37707753 - 37707526
Alignment:
| Q |
96 |
acaattttaaatgccattattgataagcaggtggaacaaaatgtgttttttgcaacaatggcaagatgaaaaaagagatggggttggttgactgcaaagt |
195 |
Q |
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| T |
37707753 |
acaattttaaatgccatgattgataagcaggtggaacaaaatgtgttttttgcaacaacggcaagatgaaaaaagagatggggttggttgactgcaaagt |
37707654 |
T |
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| Q |
196 |
atgcaagggttcaggtatctctttatgtcattatcacttatataca-aaaattgttattggacatctagcgaaattgcatttattttgcattcttgattt |
294 |
Q |
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| T |
37707653 |
atgcaagggttcaggtatctctttatgtcattatctcttatatacaaaaaattgttattggacatcatgcaaaattgcatttattttgcattctttattt |
37707554 |
T |
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| Q |
295 |
aatatgaataatttgggttgtgcttctc |
322 |
Q |
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| T |
37707553 |
aatatgaataatttgggttgtgcttctc |
37707526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 37707820 - 37707767
Alignment:
| Q |
59 |
caacttgtattcgtattaatgagtgttgataaaagctacaattttaaatgccat |
112 |
Q |
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| T |
37707820 |
caacttgtattcttattaatgagtgttgataaaagctacaattttaaatgccat |
37707767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 37704454 - 37704486
Alignment:
| Q |
29 |
accaaaaaggttgacttattagattgtttgcaa |
61 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaa |
37704486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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