View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_high_3 (Length: 477)
Name: NF21113_high_3
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Original strand, 22061533 - 22061983
Alignment:
| Q |
9 |
ggacatcatcatcatccccagaaatacaatcttcaccagcgatctccatctctgatcagtttatcagcaaaacctccaattcatgctcctgttactcctc |
108 |
Q |
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| T |
22061533 |
ggacatcatcatcatccccggaaatacaatcttcaccagcgatctccatctctgatcagtttatcagcaaaacctccaattcatgctcctgttactcctc |
22061632 |
T |
|
| Q |
109 |
cactccgataatccttccttcttcgcttcaacacctaaatccggccaattgtttctgacgataataccaaaggttcactcgccggcgatggatttcggtg |
208 |
Q |
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| T |
22061633 |
cactccgatattccttccttcttcgctccaacacctaaatccggccaattgtttctgacgataataccaaaggttcactcgccggcgatggatttcggtg |
22061732 |
T |
|
| Q |
209 |
ttggattgtcggcgaaccctatt----aattatatccaaaatggtgctaacatctttgacaaaatcatcatcccttagatgtaactgattactattctta |
304 |
Q |
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| T |
22061733 |
ttggattgtcggcgaaccctattcgttaattatatccaaaatggtgttaacatctttgacaaaatgatcatcccttagatgtaactgattactattctta |
22061832 |
T |
|
| Q |
305 |
tcatgaacatcatcactgtcgtcttcattattgtcatcgccacttgaggattcagcagaaaagaacctaactgaaaaactgaatttcggtggagccaaaa |
404 |
Q |
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| T |
22061833 |
tcatgaacatcatcactgtcgtcttcattattgtcatcaccacttgaggattcagcagaaaagaacctaactgaaaaactgaatttcggtggagccaaaa |
22061932 |
T |
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| Q |
405 |
taatgtaataatttgaagaattaaaagcattgaaagaagcatccatgagag |
455 |
Q |
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| T |
22061933 |
taatgtaataatttgaagaattaaaagcattgaaagaagcatccatgagag |
22061983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 232 - 455
Target Start/End: Complemental strand, 32904337 - 32904114
Alignment:
| Q |
232 |
aattatatccaaaatggtgctaacatctttgacaaaatcatcatcccttagatgtaactgattactattcttatcatgaacatcatcactgtcgtcttca |
331 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| |
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| T |
32904337 |
aattatatccaaaatggtcttaacatctttgacaaaaccatcatcccttaaatgtaactgactactattcttatcatgatcatcatcaccgtcatcttca |
32904238 |
T |
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| Q |
332 |
ttattgtcatcgccacttgaggattcagcagaaaagaacctaactgaaaaactgaatttcggtggagccaaaataatgtaataatttgaagaattaaaag |
431 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
32904237 |
ttatagtcatcgtcacttgaggattcagcagaaaagaacctaactgaaaaactaaatttcggtggagcgaaaaaagtgtaataatttgaagaattaaaag |
32904138 |
T |
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| Q |
432 |
cattgaaagaagcatccatgagag |
455 |
Q |
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||||||||||||||| ||| |||| |
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| T |
32904137 |
cattgaaagaagcattcataagag |
32904114 |
T |
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