View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_high_8 (Length: 431)
Name: NF21113_high_8
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 10459796 - 10459629
Alignment:
| Q |
9 |
agcagagaggaattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgggaagagtctttatagctgtagatttaatcaaggggttgcttac |
108 |
Q |
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| T |
10459796 |
agcaaagaggaattgattcaaaaaagaaaattgaaaatacgagagaatttaaaatgagaagagtctttatagctgtaaatttaatcaaggggttgcttac |
10459697 |
T |
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| Q |
109 |
ttggagtaagttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
176 |
Q |
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| T |
10459696 |
ttggagtaagttactagttaaattcctaaaaactaacttaaatctaatttcatcatacctaatattgg |
10459629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 248 - 405
Target Start/End: Complemental strand, 10459557 - 10459400
Alignment:
| Q |
248 |
gtaacacatttatagaggagaatttgaaatgcaatagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
347 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10459557 |
gtaacacatttatagaggagaatttgaaatgcagtagaaaaaatcaattcaagaaatataatggtaactgcattgcatgcattttcaaaattagtgacac |
10459458 |
T |
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| Q |
348 |
ttataactttcataataacttgaaccannnnnnnngaaagaataataacttgaatcat |
405 |
Q |
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| T |
10459457 |
ttataactttcataataacttgaaccattttttttgaaagaataataacttgaatcat |
10459400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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