View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21113_low_1 (Length: 594)

Name: NF21113_low_1
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21113_low_1
NF21113_low_1
[»] chr5 (9 HSPs)
chr5 (13-547)||(29526275-29526809)
chr5 (29-449)||(39701943-39702372)
chr5 (470-547)||(22950168-22950245)
chr5 (470-547)||(29527481-29527558)
chr5 (470-527)||(41051194-41051251)
chr5 (496-547)||(19934487-19934538)
chr5 (476-525)||(41108828-41108877)
chr5 (476-525)||(18690887-18690936)
chr5 (476-525)||(33215362-33215411)
[»] chr7 (9 HSPs)
chr7 (13-547)||(6081856-6082390)
chr7 (387-455)||(13078369-13078437)
chr7 (470-547)||(6081106-6081183)
chr7 (359-448)||(101468-101557)
chr7 (16-53)||(15432514-15432551)
chr7 (16-53)||(15490867-15490904)
chr7 (476-525)||(17166131-17166180)
chr7 (390-454)||(32169741-32169805)
chr7 (19-53)||(15567536-15567570)
[»] chr6 (3 HSPs)
chr6 (11-547)||(18132013-18132549)
chr6 (470-547)||(18133219-18133296)
chr6 (470-547)||(21535613-21535690)
[»] chr1 (10 HSPs)
chr1 (13-547)||(10583355-10583888)
chr1 (160-547)||(49122859-49123244)
chr1 (13-80)||(49122783-49122850)
chr1 (465-547)||(8089950-8090032)
chr1 (470-547)||(10582605-10582682)
chr1 (470-547)||(49121844-49121921)
chr1 (399-455)||(23541320-23541376)
chr1 (476-553)||(8788778-8788855)
chr1 (476-525)||(5721703-5721752)
chr1 (476-525)||(11359619-11359668)
[»] scaffold0227 (2 HSPs)
scaffold0227 (267-547)||(11928-12207)
scaffold0227 (13-211)||(11731-11929)
[»] scaffold0026 (2 HSPs)
scaffold0026 (390-571)||(80522-80703)
scaffold0026 (476-553)||(79412-79489)
[»] chr3 (11 HSPs)
chr3 (382-525)||(35389066-35389209)
chr3 (387-455)||(39984047-39984115)
chr3 (390-455)||(2386598-2386663)
chr3 (470-553)||(54994514-54994597)
chr3 (476-553)||(40976673-40976750)
chr3 (495-575)||(2386503-2386583)
chr3 (470-536)||(7197617-7197683)
chr3 (476-553)||(592392-592469)
chr3 (476-553)||(45826368-45826445)
chr3 (476-536)||(48637800-48637860)
chr3 (476-525)||(25184588-25184637)
[»] chr2 (6 HSPs)
chr2 (387-455)||(14685395-14685463)
chr2 (387-455)||(40422219-40422287)
chr2 (470-547)||(33789784-33789861)
chr2 (476-571)||(12324744-12324839)
chr2 (387-455)||(21307251-21307315)
chr2 (476-525)||(39814383-39814432)
[»] chr4 (5 HSPs)
chr4 (387-454)||(54641251-54641318)
chr4 (470-547)||(11961935-11962012)
chr4 (396-455)||(54938073-54938132)
chr4 (480-571)||(45638893-45638984)
chr4 (387-431)||(54641614-54641658)
[»] scaffold0018 (3 HSPs)
scaffold0018 (470-547)||(178094-178171)
scaffold0018 (470-535)||(177778-177843)
scaffold0018 (470-532)||(177831-177893)
[»] scaffold0011 (1 HSPs)
scaffold0011 (470-547)||(205820-205897)
[»] chr8 (2 HSPs)
chr8 (473-536)||(40254294-40254357)
chr8 (476-525)||(36241366-36241415)
[»] scaffold1195 (1 HSPs)
scaffold1195 (16-53)||(643-680)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Complemental strand, 29526809 - 29526275
Alignment:
Q  13 cagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgacaa 112  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     
T  29526809 cagaagaaagggatgcggaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaatttcttggtatcgacag 29526710  T
Q  113 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcggc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  29526709 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggc 29526610  T
Q  213 ctacctccacccttgccaaagccgccagatccagatgtgtttgtgatgaagagtggattatcctctggtttgatcgaactggcactatgcctattgctgc 312  Q
    |||||||||||   ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  29526609 ctacctccaccgccgccaaagccgccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcgaactggcactgtgcctattgctgc 29526510  T
Q  313 cgaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggtgg 412  Q
    | |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  29526509 caaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgacactctacttcaagttatgggaccctggtgg 29526410  T
Q  413 acacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaataggactcctaaggacaaaagttatagaatactagt 512  Q
    |||||||||| ||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||  |||||||||||| ||||    
T  29526409 acacttatgtcatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatagaataatagt 29526310  T
Q  513 ggtttatttaataatattataaataaataattgtt 547  Q
     ||||||||||||||||||||||||| ||| ||||    
T  29526309 agtttatttaataatattataaataagtaactgtt 29526275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 29 - 449
Target Start/End: Complemental strand, 39702372 - 39701943
Alignment:
Q  29 agaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgacaaactcttttatgaacat 128  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||||| ||| ||||||||    
T  39702372 agaaagttcctctgtgaatgtcatcaatgtggaaaagcaacaagagaccaaagtagatttgtgcaaatttcttggtatcaacaaactatttgatgaacat 39702273  T
Q  129 ggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcggcctacctccacccttgc 228  Q
    ||  |||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||||||||||||||||| | |||||| ||  ||||   ||    
T  39702272 ggcgtgagtattgtgttcgaattgagggtgggattgcctagaacaactaccggagagggatgggtttcacttgagttggacggccttccagcacc---gc 39702176  T
Q  229 caaagccgccagatccagatgtgtttgtgatgaagagtggattatcctctggtttgatcgaactggcactatgcctattgctgc---------------c 313  Q
    |   | | ||||||||| | | ||||| | ||||| ||||||| |||||||||||||| ||||||||||||| | |||||||||               |    
T  39702175 c---gtcaccagatccaaacgcgtttgcggtgaagggtggattgtcctctggtttgattgaactggcactattcttattgctgccactttcttttggatc 39702079  T
Q  314 gaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggtgga 413  Q
     ||||| || |||||||| | ||||| |||| |||||||||| ||||| ||||||| ||||| |||| || | |||||||| || |||||||||||||||    
T  39702078 aaaaataccaccccaaaatagagtgtttgatccatgcattagttatcaggtttcacgccttgctctgtcattgtacttcaagttttgggaccctggtgga 39701979  T
Q  414 cacttatgttatccttcaccttgaggacaaggtgaa 449  Q
    ||||||| ||||||||||||||||||||||||||||    
T  39701978 cacttatattatccttcaccttgaggacaaggtgaa 39701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 22950168 - 22950245
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  22950168 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 22950245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 29527558 - 29527481
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||| ||||||||||||||||||| ||| ||||    
T  29527558 ttagtaataggactcctaagggcagcagttatagaataatagtagtttacttaataatattataaataagtaactgtt 29527481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 41051251 - 41051194
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataat 527  Q
    ||||||||||||||||||||| || |||||||||||  ||||| ||||||||||||||    
T  41051251 ttagtaataggactcctaagggcataagttatagaaagctagttgtttatttaataat 41051194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 496 - 547
Target Start/End: Original strand, 19934487 - 19934538
Alignment:
Q  496 agttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  19934487 agttatagaataatagtagtttatttaataatattataaataagtaactgtt 19934538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 41108828 - 41108877
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  41108828 ataggactcctaagggcataagttatagaatattagttgtttatttaata 41108877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 18690887 - 18690936
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||  || ||||||||||||| |||| ||||||||||||    
T  18690887 ataggactcctaagagcataagttatagaatattagttgtttatttaata 18690936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 33215411 - 33215362
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || ||||| ||||||| |||| ||||||||||||    
T  33215411 ataggactcctaaggccataagttttagaatattagttgtttatttaata 33215362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Original strand, 6081856 - 6082390
Alignment:
Q  13 cagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgacaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     
T  6081856 cagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaatttcttggtatcgacag 6081955  T
Q  113 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcggc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  6081956 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggc 6082055  T
Q  213 ctacctccacccttgccaaagccgccagatccagatgtgtttgtgatgaagagtggattatcctctggtttgatcgaactggcactatgcctattgctgc 312  Q
    |||||||||||   ||||| ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  6082056 ctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcaaactggcactgtgcctattgctgc 6082155  T
Q  313 cgaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggtgg 412  Q
    | |||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  6082156 caaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtgg 6082255  T
Q  413 acacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaataggactcctaaggacaaaagttatagaatactagt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||  |||||| ||||| ||||    
T  6082256 acacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatggaataatagt 6082355  T
Q  513 ggtttatttaataatattataaataaataattgtt 547  Q
     ||||||||||||||||||||||||| ||| ||||    
T  6082356 agtttatttaataatattataaataagtaactgtt 6082390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 13078369 - 13078437
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13078369 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 13078437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 6081106 - 6081183
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  6081106 ttagtaataggactcctaagggcagcagttatggaataatagtagtttatttaataatattataaataagtaactgtt 6081183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 448
Target Start/End: Original strand, 101468 - 101557
Alignment:
Q  359 tcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtga 448  Q
    ||||||||||||| ||| ||| ||| |||| || || |||||||||||  ||||||| |||| | ||||||||||||||| |||||||||    
T  101468 tcatgtttcacacattgttctaccattctatttgaagttatgggacccaagtggacatttatataatccttcaccttgagtacaaggtga 101557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 15432514 - 15432551
Alignment:
Q  16 aagaaagggatgcagaaaattcctctgtgaatgtcatc 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15432514 aagaaagggatgcagaaaattcctctgtgaatgtcatc 15432551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 15490867 - 15490904
Alignment:
Q  16 aagaaagggatgcagaaaattcctctgtgaatgtcatc 53  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15490867 aagaaagggatgcagaaaaatcctctgtgaatgtcatc 15490904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 17166180 - 17166131
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  17166180 ataggactcctaaggccataagttatagaatattagttgtttatttaata 17166131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 32169805 - 32169741
Alignment:
Q  390 ttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 454  Q
    ||||||||| || ||||| |||||||||  ||| ||| |||||||||||||||||||||| ||||    
T  32169805 ttcaaattacggaaccctagtggacactattgtaatcattcaccttgaggacaaggtgaaacttt 32169741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 15567536 - 15567570
Alignment:
Q  19 aaagggatgcagaaaattcctctgtgaatgtcatc 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  15567536 aaagggatgcagaaaattcctctgtgaatgccatc 15567570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 18132549 - 18132013
Alignment:
Q  11 cacagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgac 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||    
T  18132549 cacagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatcagcgcaaatttcttggtatcgac 18132450  T
Q  111 aaactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcg 210  Q
    | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18132449 agacttttttatgaacatggtatgagtagtgtgttcgaatcgatggcgaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcg 18132350  T
Q  211 gcctacctccacccttgccaaagccgccagatccagatgtgtttgtgatgaagagtggattatcctctggtttgatcgaactggcactatgcctattgct 310  Q
    || |||||||||   |||||||||| ||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||||||||||||| |||||||||||    
T  18132349 gcttacctccacggctgccaaagccaccagatccagacgtgtttgtggtgaagggtggatgatcctttggtttgatcgaactggcactgtgcctattgct 18132250  T
Q  311 gccgaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggt 410  Q
    ||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  18132249 gccaaaaattcctccccagaagagagtgtctgatgcatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagttatgggaccctggt 18132150  T
Q  411 ggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaataggactcctaaggacaaaagttatagaatacta 510  Q
    |||||||||| ||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||  |||||||||||| ||    
T  18132149 ggacacttattttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatagaataata 18132050  T
Q  511 gtggtttatttaataatattataaataaataattgtt 547  Q
    || ||||||||||||||||||||||||| ||| ||||    
T  18132049 gtagtttatttaataatattataaataagtaactgtt 18132013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 18133296 - 18133219
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  18133296 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 18133219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 21535613 - 21535690
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  21535613 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 21535690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Original strand, 10583355 - 10583888
Alignment:
Q  13 cagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgacaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     
T  10583355 cagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaatttcttggtatcgacag 10583454  T
Q  113 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcggc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  10583455 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcttc-ttgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggc 10583553  T
Q  213 ctacctccacccttgccaaagccgccagatccagatgtgtttgtgatgaagagtggattatcctctggtttgatcgaactggcactatgcctattgctgc 312  Q
    |||||||||||   ||||| ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  10583554 ctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggattatcctctggtttgatcaaactggcactgtgcctattgctgc 10583653  T
Q  313 cgaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgtttcacaccttgatctgccactctacttcaaattatgggaccctggtgg 412  Q
    | |||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  10583654 caaaaattcctccccagaagagagtgtctgatgtatgcattagttatcatgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtgg 10583753  T
Q  413 acacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaataggactcctaaggacaaaagttatagaatactagt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||| ||  |||||||||||| ||||    
T  10583754 acacttatgttatccttcaccttgaggacaaggtgaatctttagggggggagtattgttagtaataggactcctaagggcagcagttatagaataatagt 10583853  T
Q  513 ggtttatttaataatattataaataaataattgtt 547  Q
     ||||||||||||||||||||||||| ||| ||||    
T  10583854 agtttatttaataatattataaataagtaactgtt 10583888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 160 - 547
Target Start/End: Original strand, 49122859 - 49123244
Alignment:
Q  160 aattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcggcctacctccacccttgccaaagccgccagatccagatgtgtttgtgat 259  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||   ||||| ||||||||||||||| ||||||||| |    
T  49122859 aattgcctagaaaaactatcgaagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggccgccagatccagacgtgtttgtggt 49122958  T
Q  260 gaagagtggattatcctctggtttgatcgaactggcactatgcctattgctgccgaaaattcctccccaaaagatagtgtctgatgcatgcattagctat 359  Q
    |||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| |||  ||||||||||| ||||||||| |||    
T  49122959 gaagggtggattatcctctggtttgatcaaactggcactgtgcctattgctgccaaaaattcctccccagaag--agtgtctgatgtatgcattagttat 49123056  T
Q  360 catgtttcacaccttgatctgccactctacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnn 459  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  49123057 catgtttcacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttagggg 49123156  T
Q  460 nnnagtattcttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
       |||||| ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  49123157 gggagtattgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 49123244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 49122783 - 49122850
Alignment:
Q  13 cagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaa 80  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49122783 cagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaa 49122850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 8090032 - 8089950
Alignment:
Q  465 tattcttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    |||| ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  8090032 tattgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 8089950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 10582605 - 10582682
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  10582605 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 10582682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 49121844 - 49121921
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  49121844 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 49121921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 399 - 455
Target Start/End: Complemental strand, 23541376 - 23541320
Alignment:
Q  399 tgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttta 23541320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 8788855 - 8788778
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    |||||||||||||||  | |||||||||||||||||| |||||||||||| |||||||||| | ||| |||| |||||    
T  8788855 ataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttat 8788778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 5721703 - 5721752
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || |||||||| |||| |||| ||||||||||||    
T  5721703 ataggactcctaagggcataagttataaaatattagttgtttatttaata 5721752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 11359668 - 11359619
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||  || ||||||||||||| |||| ||||||||||||    
T  11359668 ataggactcctaagagcataagttatagaatattagttgtttatttaata 11359619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 267 - 547
Target Start/End: Original strand, 11928 - 12207
Alignment:
Q  267 ggattatcctctggtttgatcgaactggcactatgcctattgctgccgaaaattcctccccaaaagatagtgtctgatgcatgcattagctatcatgttt 366  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||| |||||||||||||||| ||||||||||    
T  11928 ggattatcctctggtttgatcgaactggcactgtgcctattgctgccaaaaattcctccccagaagagagtg-ctgatgcatgcattagttatcatgttt 12026  T
Q  367 cacaccttgatctgccactctacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagta 466  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||    
T  12027 cacaccttgctctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttaagggggggagta 12126  T
Q  467 ttcttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    || ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  12127 ttgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 12207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 11731 - 11929
Alignment:
Q  13 cagaagaaagggatgcagaaaattcctctgtgaatgtcatcattgtggaaaagcaacaagagaccaaaacagatctgtgcaaatttcttggtatcgacaa 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     
T  11731 cagaagaaagggatgcagaaaattcctccgtgaatgtcatcattgtggaaaagcaacaagagaccaaagcagatctgcgcaaatttcttggtatcgacag 11830  T
Q  113 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctagaaaaattatcggagagggatgggtttcacttgagtttggcgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  11831 actcttttatgaacatggtatgagtagtgtgttcgaatcgagggcaaaattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcgg 11929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 390 - 571
Target Start/End: Original strand, 80522 - 80703
Alignment:
Q  390 ttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaataggactcctaag 489  Q
    ||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||       |||||| ||||  ||||||||||||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatctttagggggggagtattgttagatataggactcctaag 80621  T
Q  490 gacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttatctacggtcattgttgtct 571  Q
    | || |||||||||||||||||| |||||||||||| |||||||||| | ||| |||| ||||| | | || ||||||||||    
T  80622 ggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgttgtct 80703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 79412 - 79489
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||||||| |||||||||| | ||| |||| |||||    
T  79412 ataggactcctaagggcagaagttatagaatactagtattttatttaatagtattataaattagtaactgttacttat 79489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 382 - 525
Target Start/End: Original strand, 35389066 - 35389209
Alignment:
Q  382 cactctacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctttannnnnnnagtattcttagtaatagga 481  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||| ||||  ||||||    
T  35389066 cactctacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatctttagggggggagtattgttagatatagga 35389165  T
Q  482 ctcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||  || |||||||| |||| |||| ||||||||||||    
T  35389166 ctcctaagtgcataagttataaaatattagttgtttatttaata 35389209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 39984115 - 39984047
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39984115 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 39984047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 2386663 - 2386598
Alignment:
Q  390 ttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttta 2386598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 54994514 - 54994597
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| |||| |||||    
T  54994514 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttat 54994597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 40976673 - 40976750
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||| | |||||||| |||||    
T  40976673 ataggactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaattgttacttat 40976750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 495 - 575
Target Start/End: Complemental strand, 2386583 - 2386503
Alignment:
Q  495 aagttatagaatactagtggtttatttaataatattataaataaataattgttgcttatctacggtcattgttgtctacta 575  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||| | || |||| |||||||||    
T  2386583 aagttatagaatactagttgtttatttaataatattataaataagtaactgttgcttgtctgcagtaattgctgtctacta 2386503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 7197617 - 7197683
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaat 536  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| |||||||||||||||||||||||    
T  7197617 ttagtaataggactcctaagggcagtagttatagaataatagtagtttatttaataatattataaat 7197683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Original strand, 592392 - 592469
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    |||||||||||||||  | |||||||||||||||||| |||||||||||| |||||||||| | ||| |||| |||||    
T  592392 ataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttat 592469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 45826445 - 45826368
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttat 553  Q
    ||||||||||||||| || ||||||||||| |||||| |||||||||||| |||||||||| | ||| |||| |||||    
T  45826445 ataggactcctaagggcagaagttatagaacactagttgtttatttaatagtattataaattagtaactgttacttat 45826368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 536
Target Start/End: Complemental strand, 48637860 - 48637800
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaat 536  Q
    ||||||||||||||| || | |||||||||||||||| |||||||||||| ||||||||||    
T  48637860 ataggactcctaagggcagaggttatagaatactagttgtttatttaatagtattataaat 48637800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 25184588 - 25184637
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||| ||||| || ||||||||||||| |||| ||||||||||||    
T  25184588 ataggactcgtaagggcataagttatagaatattagttgtttatttaata 25184637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 14685395 - 14685463
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  14685395 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 14685463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 40422219 - 40422287
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  40422219 tacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttta 40422287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 33789784 - 33789861
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  33789784 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 33789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 476 - 571
Target Start/End: Original strand, 12324744 - 12324839
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttatctacggtcattgttgtct 571  Q
    ||||||||||||||| || |||||||| ||||||||| |||||||||||| |||||||||| | |||||||| ||||| | | || ||||||||||    
T  12324744 ataggactcctaagggcagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtct 12324839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 21307251 - 21307315
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    |||||||| ||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||    
T  21307251 tacttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttta 21307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 39814383 - 39814432
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || |||||||| |||| |||| ||||||||||||    
T  39814383 ataggactcctaagggcataagttataaaatattagttgtttatttaata 39814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 454
Target Start/End: Complemental strand, 54641318 - 54641251
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 454  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  54641318 tacttcaagttatgggaccctggtggacacttctgttatccctcaccttgaggacaaggtgattcttt 54641251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Original strand, 11961935 - 11962012
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  11961935 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 11962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 54938132 - 54938073
Alignment:
Q  396 ttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttta 455  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  54938132 ttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttta 54938073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 480 - 571
Target Start/End: Complemental strand, 45638984 - 45638893
Alignment:
Q  480 gactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgttgcttatctacggtcattgttgtct 571  Q
    ||||||||||| || |||||||||||||||||| |||||||||||| |||||||||| | ||| |||| ||||| | |||| |||| |||||    
T  45638984 gactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcggtaattgctgtct 45638893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 54641658 - 54641614
Alignment:
Q  387 tacttcaaattatgggaccctggtggacacttatgttatccttca 431  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||    
T  54641658 tacttcaagttatgggaccctggtggacacttttgttatacttca 54641614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 178171 - 178094
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  178171 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 178094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 177778 - 177843
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaa 535  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| ||||||||||||||||||||||    
T  177778 ttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaa 177843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 177893 - 177831
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattat 532  Q
    ||||||||||||||||||||| ||  |||||||||||| |||| |||||||| ||||||||||    
T  177893 ttagtaataggactcctaagggcagcagttatagaataatagtagtttattttataatattat 177831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 205897 - 205820
Alignment:
Q  470 ttagtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaataaataattgtt 547  Q
    |||||||||||||||||| || ||  |||||||||||| |||| ||||||||||||||||||||||||| ||| ||||    
T  205897 ttagtaataggactcctacgggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgtt 205820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 473 - 536
Target Start/End: Original strand, 40254294 - 40254357
Alignment:
Q  473 gtaataggactcctaaggacaaaagttatagaatactagtggtttatttaataatattataaat 536  Q
    ||||||||||||||||||  | ||| |||||||||||||| |||||||||||||||||||||||    
T  40254294 gtaataggactcctaagggaagaagctatagaatactagttgtttatttaataatattataaat 40254357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 36241415 - 36241366
Alignment:
Q  476 ataggactcctaaggacaaaagttatagaatactagtggtttatttaata 525  Q
    ||||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  36241415 ataggactcctaagggcataagttatagaatattagttgtttatttaata 36241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 643 - 680
Alignment:
Q  16 aagaaagggatgcagaaaattcctctgtgaatgtcatc 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  643 aagaaagggatgcagaaaattcctctgtgaatgtcatc 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University