View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_low_13 (Length: 318)
Name: NF21113_low_13
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 5331612 - 5331896
Alignment:
| Q |
17 |
attaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcggattggagat |
116 |
Q |
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| T |
5331612 |
attaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcggattggagat |
5331711 |
T |
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| Q |
117 |
ttaccaaaagtaagtcacgaaactctcacgctgaatgaatagtcttgtaagattcgacttttctcataggcttaagtcatacctacggtctactagtgct |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5331712 |
ttaccaaaagtaagtcacgaaactctcacgctaaatgaatagtcttgtaagattcgacttttctcataggcttaagtcataactacggtctactagtgct |
5331811 |
T |
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| Q |
217 |
tttcttgagagttaagttacgtaaaaggcggcctatagactttattaaggttcaccattgaataccaatagacgagtgaagctgc |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331812 |
tttcttgagagttaagttacgtaacgggcggcctatagactttattaaggttcaccattgaataccaatagacgagtgaagctgc |
5331896 |
T |
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