View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_low_14 (Length: 313)
Name: NF21113_low_14
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 112 - 301
Target Start/End: Original strand, 46824349 - 46824538
Alignment:
| Q |
112 |
ccctataaaaagcaatcttagctatagctatagtaaatcaatcacaaggcaaaatttcattaaaaaatttccaatggcactagtaaaattgactatgggt |
211 |
Q |
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| T |
46824349 |
ccctataaaaagcaatcttagctatagctatagtaaatcaatcacaaggcaaaatttcattaaaaaatttccaatggcactagtaaaattgactatgggt |
46824448 |
T |
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| Q |
212 |
cttgttttggttacattaactttgctctatgcaagtgttacggcacaatcaaattgcacggatgcgttaatgagtttgataccatgccta |
301 |
Q |
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| T |
46824449 |
cttgtttttgttacattaactttgctctgtgcaggtgttacggcacaatcaaattgcacggatgcgttaatgagtttgatgccatgccta |
46824538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 46828625 - 46828784
Alignment:
| Q |
112 |
ccctataaaaagcaatcttagctatagctatagtaaatcaatcacaaggcaaaatttcattaaaaaatttccaatggcactagtaaaattgactatgggt |
211 |
Q |
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| T |
46828625 |
ccctataaaaagcaagcatagttataacgacaggaaataaatcacaaagcaaagtttcactgaaagatttccaatggcacaagtaaaattcaatataggt |
46828724 |
T |
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| Q |
212 |
cttgttttggttacattaactttgctctatgcaagtgttacggcacaatcaaattgcacg |
271 |
Q |
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| T |
46828725 |
cttgttttggttacattaaccttgctctatgcaagtggtacggcacaatcaagttgcacg |
46828784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 46823756 - 46823822
Alignment:
| Q |
18 |
ctaaccagcttccacgtttaaattttttgtacttcacccacgtaataaccttccttctctttctcca |
84 |
Q |
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| T |
46823756 |
ctaaccagcttccacttttaaattttttgtacttcacccacgtaataaccttccttctctttctcca |
46823822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 46828396 - 46828426
Alignment:
| Q |
50 |
ttcacccacgtaataaccttccttctctttc |
80 |
Q |
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| T |
46828396 |
ttcacccacgtaataaccttccttctctttc |
46828426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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