View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21113_low_15 (Length: 313)

Name: NF21113_low_15
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21113_low_15
NF21113_low_15
[»] chr1 (2 HSPs)
chr1 (145-296)||(37774936-37775087)
chr1 (9-75)||(37775157-37775223)
[»] chr4 (1 HSPs)
chr4 (152-296)||(8814533-8814677)
[»] chr2 (1 HSPs)
chr2 (154-222)||(16603134-16603202)
[»] chr3 (2 HSPs)
chr3 (152-222)||(43393700-43393770)
chr3 (171-222)||(23073111-23073162)
[»] chr6 (1 HSPs)
chr6 (152-222)||(18573293-18573363)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 145 - 296
Target Start/End: Complemental strand, 37775087 - 37774936
Alignment:
Q  145 ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37775087 ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa 37774988  T
Q  245 agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37774987 agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatc 37774936  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 37775223 - 37775157
Alignment:
Q  9 acatcatcaaattacgatcatagggtatccgtttcaatcccttcttcttcttccttcgaaaccctag 75  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37775223 acatcatcaaattacgatcatagggtatccgtttcaatcacttcttcttcttccttcgaaaccctag 37775157  T

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Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 152 - 296
Target Start/End: Original strand, 8814533 - 8814677
Alignment:
Q  152 catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaaagaccgt 251  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||     
T  8814533 catgaatcttccatcatcaaaacccattctctctaaatcccctcccaacatcttccccttcgtcaaaggcaaatgttgtaactgtggcatcaaagaccgc 8814632  T
Q  252 tggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatc 296  Q
    ||||||||||||||||| || |||||||||||||||||| |||||    
T  8814633 tggcttctccacaacgttgttgttcgcggcgtcgatcgtggaatc 8814677  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 16603134 - 16603202
Alignment:
Q  154 tgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg 222  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  16603134 tgaatcttccataatcagaacccattctctctgaatcccctcccaacatattccccttcgtcaaaggcg 16603202  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 43393770 - 43393700
Alignment:
Q  152 catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg 222  Q
    |||||||||||||| |||||||||||||| || |||||| ||||||||||| |||||||||||||||||||    
T  43393770 catgaatcttccataatcaaaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg 43393700  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 23073162 - 23073111
Alignment:
Q  171 aaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg 222  Q
    |||||||||| || |||||| ||||||||||| |||||||||||||||||||    
T  23073162 aaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg 23073111  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 18573293 - 18573363
Alignment:
Q  152 catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg 222  Q
    |||||||||||||| ||||||||| |||| || |||||| ||||||||||| |||||||||||||||||||    
T  18573293 catgaatcttccataatcaaaacctattccctttgaatcccctcccaacatattccccttcgtcaaaggcg 18573363  T

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