View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_low_20 (Length: 226)
Name: NF21113_low_20
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 23861326 - 23861536
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861326 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
23861425 |
T |
|
| Q |
101 |
gatcacttttgttggtcaagtcttctttaacaaattcatattcaattcctttgaatttgagtgcaatctgtaccctgcnnnnnnntgggcttcccacaac |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23861426 |
gatcacttttgtttgtcaagtcttctttaacaaattcgtattcaattcctttgaatttgagtgcaatctgtaccctgcaaaaaaatgggcttcccacaac |
23861525 |
T |
|
| Q |
201 |
tcccaaaagtt |
211 |
Q |
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||||||||||| |
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| T |
23861526 |
tcccaaaagtt |
23861536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23864920 - 23865097
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
100 |
Q |
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|||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
23864920 |
tcatcaatatactgaagaatcacaagagattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatatgaggagaa |
23865019 |
T |
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| Q |
101 |
gatcacttttgttggtcaagtcttctttaacaaattcatattcaattcctttgaatttgagtgcaatctgtaccctgc |
178 |
Q |
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|||| |||||||||| ||||||||||| |||| ||| |||||||||||||| | || || |||||||||||||||| |
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| T |
23865020 |
gatcgcttttgttggccaagtcttcttgaacatatttgtattcaattcctttccacttaagagcaatctgtaccctgc |
23865097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23844123 - 23844300
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |
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| T |
23844123 |
tcatcaatgtactcaagaatcacaagggattctgatataggtttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagtt |
23844222 |
T |
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| Q |
101 |
gatcacttttgttggtcaagtcttctttaacaaattcatattcaattcctttgaatttgagtgcaatctgtaccctgc |
178 |
Q |
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| ||||| ||| ||| || | ||||| ||||||||||||||||||||| || || ||||| |||||||||||||||| |
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| T |
23844223 |
gttcactcttggtggctaaattttcttcaacaaattcatattcaattcccttcaacttgagagcaatctgtaccctgc |
23844300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23840675 - 23840852
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
100 |
Q |
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|
|||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||| |||||||| ||||||||||| ||||| ||||| || |||| |
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| T |
23840675 |
tcatcaatgtactcaagaatcacaagagattctgaaatgggcttatcattgtgaacaaaaactggaaccttcttatgaactggattatatttaagaagaa |
23840774 |
T |
|
| Q |
101 |
gatcacttttgttggtcaagtcttctttaacaaattcatattcaattcctttgaatttgagtgcaatctgtaccctgc |
178 |
Q |
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| ||||| || ||| ||| | ||||| || |||||||||||||||||| || || || || |||||||||||||||| |
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| T |
23840775 |
gttcactctttgtggccaaattttcttcaagaaattcatattcaattcccttcaactttagagcaatctgtaccctgc |
23840852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23857357 - 23857534
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaa |
100 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| |||||||| ||||| ||||||||||||| |||||| || || |||| ||| ||||| || ||||| |||| |
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| T |
23857357 |
tcatcaatatactcaataatcaaaagggactctgatataggcttttcattgtgaacaaaaactggtatctttttataaactggattatacttgagaagaa |
23857456 |
T |
|
| Q |
101 |
gatcacttttgttggtcaagtcttctttaacaaattcatattcaattcctttgaatttgagtgcaatctgtaccctgc |
178 |
Q |
| |
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| ||||||||||||| || || ||||| || ||||| ||||||||||| || ||||| || |||||||||||||||| |
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| T |
23857457 |
gttcacttttgttggccatgttttcttcaagaaatttgtattcaattcccttcaattttagagcaatctgtaccctgc |
23857534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23791784 - 23791839
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaac |
56 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
23791784 |
tcatcaatatactcaagaatcacaagggattctgatatgggcttatcattatgaac |
23791839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 23802579 - 23802670
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtattt |
92 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| ||||| ||||| |||| || ||| |||| |||||||| ||| || |||||||| |
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| T |
23802579 |
tcatcaatatattcaagaatcacaagggactctgatatgggcttatcattatgaataaaaacaggaactttcttataaacagggttgtattt |
23802670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23852996 - 23852930
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaa |
67 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||| || |||||| |||| |||||||||||||||| |
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|
| T |
23852996 |
tcatcaatatactcaagaatcacacgtgattctgaaataggcttcccattatgaacaagaactggaa |
23852930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23828191 - 23828246
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaac |
56 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
23828191 |
tcatcaacatactcaagaatcacaagggattctgatatgggcttatcattatgaac |
23828246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23855371 - 23855305
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaa |
67 |
Q |
| |
|
|||||||| ||||||||||||||| | || ||||| | ||||||||||||||||||||||| |||| |
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|
| T |
23855371 |
tcatcaatatactcaagaatcacacgagactctgaaacgggcttctcattgtgaacaagaacaggaa |
23855305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23808047 - 23808135
Alignment:
| Q |
1 |
tcatcaatgtactcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgta |
89 |
Q |
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|||||||| ||||||||||||||||| ||||| || || ||||| ||||| | ||| | ||| |||| |||||||| ||| || ||||| |
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| T |
23808047 |
tcatcaatatactcaagaatcacaagtgattcagagatgggcttgtcattataaactaaaacaggaactttcttataaacagggttgta |
23808135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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