View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_low_7 (Length: 436)
Name: NF21113_low_7
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 43428766 - 43429169
Alignment:
| Q |
9 |
gagatgaatacaacttggtggatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattctggtgactagagaaa |
108 |
Q |
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| T |
43428766 |
gagatgaatacaacttggtgaatgggggaaaagatagaatgagtagaaagagagaatccaaatctcccacgaccagtttggattc-ggtgactcga--aa |
43428862 |
T |
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| Q |
109 |
caacaagagtaannnnnnnnnn-ccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattgannnnnnn-ctattcacag |
206 |
Q |
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| T |
43428863 |
caacaagagtaatttttttttttccgcttatctccaaattctgatatcgagtgagttggttccttcttcttccatgcattgattttttttctattcatag |
43428962 |
T |
|
| Q |
207 |
ttaccgtgtgtttgtgtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgtacatgtttgatcaaaacgcctcgttcgttgattgtg |
306 |
Q |
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| T |
43428963 |
ttaacgtgtgtttgtgtatgtatgcatgtatgtatgagctattcattttatttcgtaaccttgtacatgtttgatcaaaatgcctcgttcattgattgtg |
43429062 |
T |
|
| Q |
307 |
ttgttgttagagacttgcggcaaaataagacggttcctctgtgtagttagttaatttgatctccacatttaaagaagtataggtgttttatatgtaaatt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43429063 |
ttgttgttagagacttgcggcaaaataagacggttcctctgtgtagttagttaatttgatctccacttttaaagaagtataggtgttttatatgtaaatg |
43429162 |
T |
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| Q |
407 |
tgatccc |
413 |
Q |
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| T |
43429163 |
tgatccc |
43429169 |
T |
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