View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21113_low_9 (Length: 424)
Name: NF21113_low_9
Description: NF21113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21113_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 1158572 - 1158937
Alignment:
| Q |
18 |
attttcaaacagaatattttatattctttgacctcattttcattaacttgtggacaatgccgccattaacatttcattaacttgttttgcaaattattgt |
117 |
Q |
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| T |
1158572 |
attttcaaacagaatattttatattctttgacctcattttcattaacttgtggacaatgcc---attaacatttcattaacttgttttgcaaattattgt |
1158668 |
T |
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| Q |
118 |
agtaggagtacatcaaaactgtgaactcatgtaagttaccacccttcttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtacc |
217 |
Q |
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| T |
1158669 |
agtaggagtacatcaaaactgtgaactcatgtaagttaccacccttcttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtacc |
1158768 |
T |
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| Q |
218 |
ttgtagagtacatcggaccgctgattaaaaacacgaatgttaattgtatatgttcttcaatcaagagtgaaacctatttga-ttctgctaatgcctaaaa |
316 |
Q |
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| T |
1158769 |
t--tag-----------cttgtgattaaaaacacgaatgttaattgtatatgttcttcaatcaagagtgaaacctatttgatttctgctaatgcctaaaa |
1158855 |
T |
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| Q |
317 |
tcttttaacatatcacaattagcttgatcgacaatacgatgacactaaaaggaatgcatgtcgattttcattaatctcatga |
398 |
Q |
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| T |
1158856 |
tcttttaacatgtcacaattagcttgatcgacaacacgatgacactaaaaggaatgcatgtcgattttcattaatctcatga |
1158937 |
T |
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