View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21114_high_1 (Length: 636)
Name: NF21114_high_1
Description: NF21114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21114_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 71 - 616
Target Start/End: Complemental strand, 2785644 - 2785100
Alignment:
| Q |
71 |
attgaacataagaaaataactaagctcactttcccagaaatgattgtagtaactttaaaacaagcacaccctaaacattatcttttctcaacgtgaggac |
170 |
Q |
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| T |
2785644 |
attgaacataagaaaataactaagctcactttcccagaaatgattgtagtaactttaaaacaagcacaccctaaacattatcttttctcaacgtgaggac |
2785545 |
T |
|
| Q |
171 |
gttgatttaatggctcaggcgtttatggttaattgttttcatatcaaatcctctttatcttttgtaattccacaccnnnnnnncgttgataaaagtaaat |
270 |
Q |
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| T |
2785544 |
gttgatttaatgtctcaggtgtttatggttaattgttttcatatcaaatcctctttatcttttgtaattccacacctttttttggttgataaaagtaaat |
2785445 |
T |
|
| Q |
271 |
ccactcttttgtcatgtttccttcatctctttattattcgtacacatttcttattagnnnnnnnnnnnnnnnnnnnnnnnncaatttagattcatgtctt |
370 |
Q |
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| T |
2785444 |
ccactcttttgtcatgtttccttcatctctttattattcgtacacatttcttattagttttttacattttgtttttgttttcaatttagattcatgtctt |
2785345 |
T |
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| Q |
371 |
tgcccaatactccaatgcgcacatgtgaaatagtcttgcaccaaagtctataaacaagtttattttctagcattagattaataataatcacattatattt |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785344 |
tgcccaatactccaatgcgcacatgtgaaatagtcttgcaccatagtctataaacaagtttattttctagcattagattaataataatcacattatattt |
2785245 |
T |
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| Q |
471 |
catttgatctaatgatgtaatttgctgattccaatgatataaataaatttatctatgatacaagatttatctcacttgacacttgtacatcataaaatga |
570 |
Q |
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| T |
2785244 |
catttgatctaataatgtaatttgctgatt-caatgatataaacaaatttatctatgatacaagatttatcccacttgacacttgtacatcataaaatga |
2785146 |
T |
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| Q |
571 |
tgttatatctcatacaagatttatcccacgttatatttcatttgat |
616 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2785145 |
tgttatatctcataaaagatttatcccacattatatttcatttgat |
2785100 |
T |
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