View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21114_high_5 (Length: 276)

Name: NF21114_high_5
Description: NF21114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21114_high_5
NF21114_high_5
[»] chr7 (1 HSPs)
chr7 (11-259)||(28521398-28521646)
[»] chr8 (3 HSPs)
chr8 (54-190)||(12726438-12726574)
chr8 (44-169)||(34293669-34293794)
chr8 (72-142)||(9506730-9506800)
[»] chr1 (2 HSPs)
chr1 (76-142)||(18214692-18214758)
chr1 (76-142)||(139462-139528)
[»] chr2 (1 HSPs)
chr2 (81-142)||(29560925-29560986)
[»] chr6 (2 HSPs)
chr6 (81-149)||(19823499-19823567)
chr6 (81-149)||(19888588-19888656)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 28521398 - 28521646
Alignment:
Q  11 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521398 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 28521497  T
Q  111 ggtgtagcagcatatgtgaagtcatttcatcccaattggagtcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 210  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521498 ggtgtagcagcatatgtgaagtcatttcatcccaaatggactcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 28521597  T
Q  211 taaatatcacnnnnnnnaatcttgtacaaattgatccaaagcttattta 259  Q
    ||||||| ||       ||||||||||||||||||||||||||||||||    
T  28521598 taaatattactttttttaatcttgtacaaattgatccaaagcttattta 28521646  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 12726574 - 12726438
Alignment:
Q  54 caattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattggagtc 153  Q
    ||||||||||||||| || | || ||||| || || ||| |||| ||||||||  |||| |||||||||||||||||||||||||| ||  |||||| ||    
T  12726574 caattttcagaatttacactgatgtccggtacatcaatgtcatgccctcatgtttctggagtagcagcatatgtgaagtcatttcacccagattggactc 12726475  T
Q  154 ctgctgcaatcagatctgcaattatcaccactggtga 190  Q
    |||| ||||||||||| ||||| || ||||| |||||    
T  12726474 ctgccgcaatcagatcagcaataattaccacaggtga 12726438  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 34293669 - 34293794
Alignment:
Q  44 aggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatccc 143  Q
    |||||| || |||||||||| |||| || |||| || || |||||||||||||| |||||  |  ||||  ||||||||||||||||||||||||| ||     
T  34293669 aggggacactcaattttcagtatttacactaatgtctggcacttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcaccca 34293768  T
Q  144 aattggagtcctgctgcaatcagatc 169  Q
    |||||||  |||||||||||||||||    
T  34293769 aattggacccctgctgcaatcagatc 34293794  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 9506730 - 9506800
Alignment:
Q  72 ataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||| ||| ||||| || |||||||||||||| || ||||| || || ||||||||||| |||||||||||    
T  9506730 ataaaatctggaacctctatggcatgtcctcacgttgctggagttgctgcatatgtgaaatcatttcatcc 9506800  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 18214692 - 18214758
Alignment:
Q  76 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||||||||| || |||||||| |||||||| ||||| || |  |||||||||||||||||||||||    
T  18214692 tatccggaacctctatggcatgccctcatgttgctggagttgttgcatatgtgaagtcatttcatcc 18214758  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 139528 - 139462
Alignment:
Q  76 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||| ||||| || |||||||| ||||||| |||||| || || ||||||||||| |||||||||||    
T  139528 tatctggaacctctatggcatgccctcatgccgctggagttgctgcatatgtgaaatcatttcatcc 139462  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 29560925 - 29560986
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||||||| ||| ||||||||||||| |||||| | |  ||||||||||| |||||||||||    
T  29560925 ggaacttctatgtcatgtcctcatgttgctggtattgttgcatatgtgaaatcatttcatcc 29560986  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 19823499 - 19823567
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 149  Q
    ||||| || ||||||||||| ||||| ||||| || |  ||||||||||| ||||||||||| ||||||    
T  19823499 ggaacctctatggcatgtccccatgttgctggagttgttgcatatgtgaaatcatttcatccaaattgg 19823567  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 19888588 - 19888656
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 149  Q
    ||||| || ||| ||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||||    
T  19888588 ggaacctctatgtcatgtccgcatgttgctggagttgctgcatatgtgaaatcatttcatccaaattgg 19888656  T

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