View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21114_low_1 (Length: 676)
Name: NF21114_low_1
Description: NF21114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21114_low_1 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 620; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 15 - 658
Target Start/End: Complemental strand, 31563246 - 31562603
Alignment:
| Q |
15 |
cataggtgacttgatttggtcgtgcgaaaacttccattgataattactgggattttcaatttgatattacttatacccgtaattctgacccacggtggat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31563246 |
cataggtgacttgatttggtcgtgcgaaaacttccattgataattacagggattttcaatttgatatcacttatacccgtaattctgacccacggtggat |
31563147 |
T |
|
| Q |
115 |
cccatggtgtgaatattgaatctggaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31563146 |
cccatggtgtgaatattgaatctggaggcgccacggaaaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaa |
31563047 |
T |
|
| Q |
215 |
ctctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31563046 |
ctctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtag |
31562947 |
T |
|
| Q |
315 |
gagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562946 |
gagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatga |
31562847 |
T |
|
| Q |
415 |
ccaatcctgtagtccaccatttgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31562846 |
ccaatcctgtagtccaccatttgttctcacgacgatcccgcccaatagtggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaa |
31562747 |
T |
|
| Q |
515 |
atttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31562746 |
atttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgagcttaaacattcaatt |
31562647 |
T |
|
| Q |
615 |
gcatcaggcacatggcttagacggcaaaagctaatgtcaactgt |
658 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31562646 |
gcatcaggcacttggcttagacggcaaaagctaatgtcaactgt |
31562603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 149 - 655
Target Start/End: Original strand, 33262346 - 33262849
Alignment:
| Q |
149 |
ggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattg |
248 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||| |||| |||| ||||||||| ||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
33262346 |
ggaaaatacaacacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattg |
33262445 |
T |
|
| Q |
249 |
ttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatcc |
348 |
Q |
| |
|
||||||||| | ||||||||| |||||||| |||||| ||||||||||||||||| | ||||||||| ||| | ||||| | ||||||||||| | ||| |
|
|
| T |
33262446 |
ttgatccaacttggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtcc |
33262545 |
T |
|
| Q |
349 |
atgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc---atttgttctcacg |
445 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||||||| |||||||| |||||||||||||||||| || || | | |||||||| |
|
|
| T |
33262546 |
atgaaaatgtcatgctactgcaacgttccctctcac------ccaattttggacagttgaaaatgaccaatcctgtattcaacttatactccttctcacg |
33262639 |
T |
|
| Q |
446 |
acgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccac |
545 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33262640 |
atgatcccgcccaatagaggtaggagaaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctc |
33262739 |
T |
|
| Q |
546 |
aagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagc |
645 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||| ||||||| |||| |||| |||||||| |
|
|
| T |
33262740 |
aggctaggtagtgtcacaaaatcatttccccctaaatttaatctttctagccaatgtaagcattcaattgtgccaggcacttggcgtagatagcaaaagc |
33262839 |
T |
|
| Q |
646 |
taatgtcaac |
655 |
Q |
| |
|
| |||||||| |
|
|
| T |
33262840 |
ttatgtcaac |
33262849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 152 - 654
Target Start/End: Complemental strand, 33644825 - 33644326
Alignment:
| Q |
152 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
251 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |||||| |||||| ||||||||| ||||| || ||||||||| |
|
|
| T |
33644825 |
aaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttg |
33644726 |
T |
|
| Q |
252 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
351 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| ||| | ||| || |||| |||||||| ||| | | ||||| |||||||||| |||||||| |
|
|
| T |
33644725 |
atccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatg |
33644626 |
T |
|
| Q |
352 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccac-cat--ttgttctcacgacg |
448 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||| | |||||| |||||||||||||||| | |||| ||| | |||||| || |
|
|
| T |
33644625 |
aaaatgtcatgctcctgcaacgttccctctcac------ccaattttgaacagttgaaaatgaccaatcctgaaatccagacatcgtcattctcatctcg |
33644532 |
T |
|
| Q |
449 |
atcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaag |
548 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
33644531 |
ttcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagcttcctcagg |
33644432 |
T |
|
| Q |
549 |
ctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaa |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
33644431 |
ctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaatgtaaacattcaattgaatcaggaacatggcttagacggcaatagctaa |
33644332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 152 - 656
Target Start/End: Original strand, 33387877 - 33388384
Alignment:
| Q |
152 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
251 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33387877 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
33387976 |
T |
|
| Q |
252 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
351 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| |||| | ||| |||||||||||||||| ||| | | ||||||||| ||||||| |||||||| |
|
|
| T |
33387977 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatg |
33388076 |
T |
|
| Q |
352 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc-------at--ttgttctc |
442 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||| ||| |||||||| |||| || ||||||||| |||||| || |||||||| |
|
|
| T |
33388077 |
aaaatgtcatgctactgcaacactccctatcac------ccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctc |
33388170 |
T |
|
| Q |
443 |
acgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttc |
542 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388171 |
acgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttc |
33388270 |
T |
|
| Q |
543 |
cacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaa |
642 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||| ||| || || || ||||| | |||| |
|
|
| T |
33388271 |
ctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaa |
33388370 |
T |
|
| Q |
643 |
agctaatgtcaact |
656 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33388371 |
agctaatgtcaact |
33388384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 144 - 655
Target Start/End: Original strand, 33304199 - 33304707
Alignment:
| Q |
144 |
gccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctat |
243 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||| ||||||||||||||| ||| | |
|
|
| T |
33304199 |
gccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctct |
33304298 |
T |
|
| Q |
244 |
gattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgc |
343 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| |||||| |||| | ||| || | | ||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
33304299 |
tattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgt |
33304398 |
T |
|
| Q |
344 |
catccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtcca---ccat------ |
434 |
Q |
| |
|
|| |||||||||||||||||| |||||| | |||||||||| ||||||| |||||||| ||||||| ||||||||||| ||| ||| |
|
|
| T |
33304399 |
caaccatgaaaatgtcatgctactgcaacgttccctctcac------ccaattttggacagttgaaaatgaacaatcctgtaggccagatccagaaatat |
33304492 |
T |
|
| Q |
435 |
---ttgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtt |
531 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
33304493 |
ttgttgttctcacga--at-------aatattggtaggagaaggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatatacaagtt |
33304583 |
T |
|
| Q |
532 |
tggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggct |
631 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
33304584 |
tggaaagcttcctcaggctaggtagagtcacaaaattgtttccctctaagtttaatctttctagcgagtataaacattcaattgcatcaggaacttggct |
33304683 |
T |
|
| Q |
632 |
tagacggcaaaagctaatgtcaac |
655 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
33304684 |
tagatggcaaaagctaatgtcaac |
33304707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 160 - 596
Target Start/End: Complemental strand, 28870446 - 28870013
Alignment:
| Q |
160 |
cacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaatt |
259 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||| ||| |||||| |||||| |||||||| |||||||||| |||||||| |||||| | |
|
|
| T |
28870446 |
cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact |
28870347 |
T |
|
| Q |
260 |
cggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtc |
359 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||| || ||||||| ||| | |||||| |||||||||| |||||||||||||| | |
|
|
| T |
28870346 |
tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc |
28870247 |
T |
|
| Q |
360 |
atgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc---atttgttctcacgacgatcccgcc |
456 |
Q |
| |
|
||||| | ||| | |||||||||| | || || |||||||| ||||||| ||| ||||| |||| ||||| |||||| | |||||||| |
|
|
| T |
28870246 |
atgctacaacaacgttccctctcac------ctaaatttggacagttgaaaatgatcaaacctgttctccagggatatttgctctcacaattatcccgcc |
28870153 |
T |
|
| Q |
457 |
caatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtag |
556 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| || |||||| || |
|
|
| T |
28870152 |
cgataggggtaggagaaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcag |
28870053 |
T |
|
| Q |
557 |
tgtcacaaaatagtttccccctaaatttaatctttctagc |
596 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
28870052 |
tgtcacaaaatagtttccccgtaagtttaatctttctagc |
28870013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 139 - 656
Target Start/End: Original strand, 9166471 - 9166976
Alignment:
| Q |
139 |
gaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccat |
238 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||||| | ||||||||||| ||| || ||| |
|
|
| T |
9166471 |
gaggtgccatggagaatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccac |
9166570 |
T |
|
| Q |
239 |
gctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaat |
338 |
Q |
| |
|
||| |||||||||||||| | ||||||||| ||||||| |||||| |||| | ||| || || ||| |||| | ||||| ||| ||| |
|
|
| T |
9166571 |
gctccgattgttgatccaacttggtatttcaattcctggcgtaacaatttgaatcctatcaaa---------gtgggatggtgggtttgcctgaataaat |
9166661 |
T |
|
| Q |
339 |
tgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacca---tt |
435 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||| ||| | |||||| |||| |||||||| ||||||||||||||||| ||| | | || |
|
|
| T |
9166662 |
tgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactc------aattctggacagttgaaaatgaccaatcctgttgtcgagaaaaatt |
9166755 |
T |
|
| Q |
436 |
tgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttgga |
535 |
Q |
| |
|
|||||||| | || ||| | | ||| || ||| | ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9166756 |
tgttctcattatgagcccactcgatagtgttagaaaaaggaagttgaggcaaaaactccaacaacctgcaatgctccaaatttaaatatacaagtttgga |
9166855 |
T |
|
| Q |
536 |
aagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttaga |
635 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
9166856 |
aagcttcctcaagctaggtagtgtcgcaaaatcgattccccctaagtttaatctttctagccaccgtaaacattcaattgtatcaggcaattggcttaga |
9166955 |
T |
|
| Q |
636 |
cggcaaaagctaatgtcaact |
656 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
9166956 |
tggcaatagctaatgtcaact |
9166976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 152 - 655
Target Start/End: Original strand, 33057301 - 33057792
Alignment:
| Q |
152 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
251 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||| |||| |||||||||| || |||||| ||||||| |||||||| |||||| || ||||||||| |
|
|
| T |
33057301 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttg |
33057400 |
T |
|
| Q |
252 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
351 |
Q |
| |
|
|||||| | |||||||||||||||||| ||| || |||| |||| | || |||| |||| | |||||||||||||||| ||||||| |
|
|
| T |
33057401 |
atccaacttggtatttcacttcctggattaactatttgaatctca---------gaag---aggaacgtgggtttgccttaatgaattgtttcatccata |
33057488 |
T |
|
| Q |
352 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccaccat--------ttgttctca |
443 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| |||||||| | |||| | | || |||| |
|
|
| T |
33057489 |
aaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcctgca--ccacaaaaatagtcgtcgtactca |
33057580 |
T |
|
| Q |
444 |
cgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttcc |
543 |
Q |
| |
|
||| || || |||| || |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33057581 |
cgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggatagcttcc |
33057680 |
T |
|
| Q |
544 |
acaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaa |
643 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33057681 |
tcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcatcaggcacatggcttagatagcaaaa |
33057780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 139 - 656
Target Start/End: Original strand, 33398782 - 33399278
Alignment:
| Q |
139 |
gaggcgccacggaaaatactgcacaacatacaaagccaatgg-tatcattgatattgtcatgcataggaggagagaactctattggtattgaatcaccca |
237 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||| ||||| | | |||| |||| |||||||||| |||||| | |||||| ||||||||||||||| |
|
|
| T |
33398782 |
gaggcaccatggtaaatactgcacaacatacaaagt-aatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcaccca |
33398880 |
T |
|
| Q |
238 |
tgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaa |
337 |
Q |
| |
|
| ||||||||||||||| | ||||||||||||||||||| |||||| ||| | ||| ||| ||||||| ||| |||||| |
|
|
| T |
33398881 |
cacactgattgttgatccaacttggtatttcacttcctggaataacaatttgaga-----------------ggt-ggattgtggattggccagaatgaa |
33398962 |
T |
|
| Q |
338 |
ttgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccac-cat-- |
434 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| | |||||||||| ||||||| | |||||| |||||||||||||||| | |||| ||| |
|
|
| T |
33398963 |
ttgtatcatccatgaaaatgtcatgctactgcaacgttccctctcac------ccaattttgaacagttgaaaatgaccaatcctgaaatccagtcatcg |
33399056 |
T |
|
| Q |
435 |
ttgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttgg |
534 |
Q |
| |
|
| |||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| || |
|
|
| T |
33399057 |
tcattctcatctcgttcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagttcgg |
33399156 |
T |
|
| Q |
535 |
aaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttag |
634 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||| | |||| ||||||||||||||| || |||||||| |
|
|
| T |
33399157 |
aaagcttcctcaggctaggtagtgtcacaaaattgtttccctttaaatttaatctttctagccaatgtaaatcttcaattgcatcaggaacttggcttag |
33399256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 435 - 656
Target Start/End: Original strand, 33285621 - 33285842
Alignment:
| Q |
435 |
ttgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttgg |
534 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33285621 |
ttgttctcacgatgatcctccccaatattggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttgg |
33285720 |
T |
|
| Q |
535 |
aaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttag |
634 |
Q |
| |
|
| ||||| | || |||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||||||||||||| | ||| |||||||| |
|
|
| T |
33285721 |
acagctttctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatatttctagccaatataaacattcaattgcatatgacacttggcttag |
33285820 |
T |
|
| Q |
635 |
acggcaaaagctaatgtcaact |
656 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
33285821 |
acggcaaaagctaatgttaact |
33285842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 448 - 654
Target Start/End: Original strand, 33271841 - 33272047
Alignment:
| Q |
448 |
gatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaa |
547 |
Q |
| |
|
||||||||||| || | | |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
33271841 |
gatcccgcccactagtaggtggagaaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcag |
33271940 |
T |
|
| Q |
548 |
gctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagcta |
647 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||| || |||| |||| ||||||||||| |
|
|
| T |
33271941 |
gctaggtagtgtcacaaaattgtttccccctaaatctaatctttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaaagcta |
33272040 |
T |
|
| Q |
648 |
atgtcaa |
654 |
Q |
| |
|
||||||| |
|
|
| T |
33272041 |
atgtcaa |
33272047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 463 - 656
Target Start/End: Original strand, 33410036 - 33410229
Alignment:
| Q |
463 |
tggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcac |
562 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33410036 |
tggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtagtgtcac |
33410135 |
T |
|
| Q |
563 |
aaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaatgtcaact |
656 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||| || ||| ||||| ||||||||||||| |||||| |
|
|
| T |
33410136 |
aaaatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaaagctaatatcaact |
33410229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 450 - 648
Target Start/End: Original strand, 33358885 - 33359083
Alignment:
| Q |
450 |
tcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagc |
549 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| || || |
|
|
| T |
33358885 |
tcccacccaatagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggc |
33358984 |
T |
|
| Q |
550 |
taggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttagacggcaaaagctaa |
648 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||| || || || |||||| ||||||| |||| |
|
|
| T |
33358985 |
taggtagtgtcacaaaatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaaaactaa |
33359083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 139 - 425
Target Start/End: Original strand, 33271514 - 33271782
Alignment:
| Q |
139 |
gaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccat |
238 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||| || ||||||||| || |||||| ||||||||||| ||||||||||| |
|
|
| T |
33271514 |
gaggtgccacggaaaatactacacagcatacaaagccaatggtattat---------catgcatagcagaagagaattctattggtatcgaatcacccat |
33271604 |
T |
|
| Q |
239 |
gctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaat |
338 |
Q |
| |
|
||| ||||||||||||||| | |||||||||||||||||| | |||||||||||||| |||| || || || || | |||| |||||||| |
|
|
| T |
33271605 |
gctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaa---------taagattgcgggtttgccataatgaat |
33271695 |
T |
|
| Q |
339 |
tgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgta |
425 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||| | |||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33271696 |
tgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaatcctgta |
33271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 144 - 384
Target Start/End: Original strand, 33285309 - 33285552
Alignment:
| Q |
144 |
gccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctat |
243 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||||| ||||| ||| | |
|
|
| T |
33285309 |
gccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctct |
33285408 |
T |
|
| Q |
244 |
gattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaatag---gcagggtaggagtgtggatatgccttaatgaattg |
340 |
Q |
| |
|
|||| || |||||| | |||||||||||||||||| ||||||||||| | | || || || |||||||| ||||| | ||||||| |||||||| |
|
|
| T |
33285409 |
gattattaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattg |
33285508 |
T |
|
| Q |
341 |
tgccatccatgaaaatgtcatgctcctgcaatgctccctctcac |
384 |
Q |
| |
|
| |||||||||||||| |||||| |||||| | ||||| |||| |
|
|
| T |
33285509 |
tatcatccatgaaaatgccatgctactgcaacgttccctttcac |
33285552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 33409683 - 33409827
Alignment:
| Q |
134 |
atctggaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatca |
233 |
Q |
| |
|
|||| |||| |||| ||||| || | |||||| |||||||||||| ||| |||| ||||||||| ||| |||||| || |||| ||||||| || |
|
|
| T |
33409683 |
atcttgaggtgccatggaaattaatacacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagca |
33409782 |
T |
|
| Q |
234 |
cccatgctatgattgttgatccaattcggtatttcacttcctgga |
278 |
Q |
| |
|
|||| ||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
33409783 |
cccacgctctgattgttgatccaacttggtatttcacttcctgga |
33409827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 33358653 - 33358704
Alignment:
| Q |
149 |
ggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || |||| ||||||||||| |
|
|
| T |
33358653 |
ggaaaatactgcacaacatacaaaaccaatgacattattgttattgtcatgc |
33358704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 33409869 - 33409926
Alignment:
| Q |
326 |
tgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctca |
383 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| ||||| |||||| | ||||||||| |
|
|
| T |
33409869 |
tgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctca |
33409926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 134 - 654
Target Start/End: Original strand, 349 - 869
Alignment:
| Q |
134 |
atctggaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatca |
233 |
Q |
| |
|
|||| |||| |||| | |||||||||||||| |||||||||||||| ||| ||| |||||||||| ||| |||||| |||||| |||||||| || |
|
|
| T |
349 |
atcttgaggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaacca |
448 |
T |
|
| Q |
234 |
cccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaa |
333 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||| |||||| |||| ||||| |||||| | | |||||| ||| | | ||||| || |
|
|
| T |
449 |
cccatgctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaa |
548 |
T |
|
| Q |
334 |
tgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacca |
433 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || ||| |||||||||| ||||||| |||||||| ||||||||||||||| ||||||| | |
|
|
| T |
549 |
tgaattgtttcatccatgaaaatgttatgctactacaacattccctctcac------ccaattttggacagttgaaaatgaccaatcctttagtccaata |
642 |
T |
|
| Q |
434 |
tt------tgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatataca |
527 |
Q |
| |
|
| |||||||| || |||| |||||||| || | ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
643 |
atattcgttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatataca |
742 |
T |
|
| Q |
528 |
agtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacat |
627 |
Q |
| |
|
||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
743 |
agtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacat |
842 |
T |
|
| Q |
628 |
ggcttagacggcaaaagctaatgtcaa |
654 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
843 |
ggcttagatggcaaaagctaatgtcaa |
869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 134 - 654
Target Start/End: Original strand, 6095 - 6615
Alignment:
| Q |
134 |
atctggaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatca |
233 |
Q |
| |
|
|||| |||| |||| | |||||||||||||| |||||||||||||| ||| ||| |||||||||| ||| |||||| |||||| |||||||| || |
|
|
| T |
6095 |
atcttgaggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaacca |
6194 |
T |
|
| Q |
234 |
cccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaa |
333 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||| |||||| |||| ||||| |||||| | | |||||| ||| | | ||||| || |
|
|
| T |
6195 |
cccatgctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaa |
6294 |
T |
|
| Q |
334 |
tgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacca |
433 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || ||| |||||||||| ||||||| |||||||| ||||||||||||||| ||||||| | |
|
|
| T |
6295 |
tgaattgtttcatccatgaaaatgttatgctactacaacattccctctcac------ccaattttggacagttgaaaatgaccaatcctttagtccaata |
6388 |
T |
|
| Q |
434 |
tt------tgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatataca |
527 |
Q |
| |
|
| |||||||| || |||| |||||||| || | ||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6389 |
atattcgttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatataca |
6488 |
T |
|
| Q |
528 |
agtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacat |
627 |
Q |
| |
|
||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
6489 |
agtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacat |
6588 |
T |
|
| Q |
628 |
ggcttagacggcaaaagctaatgtcaa |
654 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
6589 |
ggcttagatggcaaaagctaatgtcaa |
6615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 139 - 656
Target Start/End: Complemental strand, 17441160 - 17440664
Alignment:
| Q |
139 |
gaggcgccacggaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccat |
238 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||| ||| ||||||||||| || |||||| |||||| |||||||||||||| |
|
|
| T |
17441160 |
gaggtgccatggaaaatactgcacaacatacaaaaccaatgatat------tattgtcatgcttaataggagattggtctattcttattgaatcacccac |
17441067 |
T |
|
| Q |
239 |
gctatgattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaat |
338 |
Q |
| |
|
||| | ||||||||||||| | |||||||| ||||||||| ||||||||||| | || ||||||| ||||| ||||||||||||| |
|
|
| T |
17441066 |
gctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaatagaaagggtt------------tgccttaatgaat |
17440979 |
T |
|
| Q |
339 |
tgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtcc---accatt |
435 |
Q |
| |
|
|| ||||||||||||||||||||| ||| || |||||||||| ||||||| |||||||| || |||| ||||||||||| || | || |
|
|
| T |
17440978 |
tgcatcatccatgaaaatgtcatgctactgtaacattccctctcac------ccaattttggacagttgaagatgaacaatcctgtaggccggtaatatc |
17440885 |
T |
|
| Q |
436 |
tgttctcacgacgatcccgcccaatactggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttgga |
535 |
Q |
| |
|
| |||| || |||||||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
17440884 |
cgccctcaactcgttcccgcccgatagcggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcga |
17440785 |
T |
|
| Q |
536 |
aagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaccttaaacattcaattgcatcaggcacatggcttaga |
635 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||| | | |||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
17440784 |
aagcttcctcaggctaggtagtgtcgcaaaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttaga |
17440685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 465 - 595
Target Start/End: Original strand, 31157250 - 31157380
Alignment:
| Q |
465 |
gtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaa |
564 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||| || || |||||| |||||||||| |
|
|
| T |
31157250 |
gtaggaaaaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcacaa |
31157349 |
T |
|
| Q |
565 |
aatagtttccccctaaatttaatctttctag |
595 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||| |
|
|
| T |
31157350 |
aattgttcccccctatatttaatctttctag |
31157380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 465 - 586
Target Start/End: Complemental strand, 31504153 - 31504032
Alignment:
| Q |
465 |
gtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaa |
564 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| || || |||||||| |||||||| |
|
|
| T |
31504153 |
gtaggagaaggaagaacaggcaaagattccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaa |
31504054 |
T |
|
| Q |
565 |
aatagtttccccctaaatttaa |
586 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
31504053 |
aattatttccccctaagtttaa |
31504032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 618
Target Start/End: Original strand, 31148343 - 31148489
Alignment:
| Q |
472 |
aaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtt |
571 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||| | |||||||| |||||||||| ||| |
|
|
| T |
31148343 |
aaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtt |
31148442 |
T |
|
| Q |
572 |
tccccctaaatttaatctttctagcgaccttaaacattcaattgcat |
618 |
Q |
| |
|
|||||||| |||||||||||||||| | | ||||| | ||||||||| |
|
|
| T |
31148443 |
tccccctagatttaatctttctagccaacgtaaacgtccaattgcat |
31148489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 465 - 587
Target Start/End: Complemental strand, 31478968 - 31478846
Alignment:
| Q |
465 |
gtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaa |
564 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| || ||||||||| || |||||||||||||||| ||||||| || || ||||||| |||||||| |
|
|
| T |
31478968 |
gtaggagaaggaagtacaggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaa |
31478869 |
T |
|
| Q |
565 |
aatagtttccccctaaatttaat |
587 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
31478868 |
aattgtttccccctaaatttaat |
31478846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 472 - 586
Target Start/End: Complemental strand, 31499016 - 31498902
Alignment:
| Q |
472 |
aaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| || || |||||| |||||||||||||||| | || || |||||||| ||||||||| | ||| |
|
|
| T |
31499016 |
aaggaagttgaggcaaagattccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt |
31498917 |
T |
|
| Q |
572 |
tccccctaaatttaa |
586 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31498916 |
tccccctaaatttaa |
31498902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 150 - 291
Target Start/End: Complemental strand, 31499342 - 31499201
Alignment:
| Q |
150 |
gaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| |||||||||| ||| ||||| | |||||| |||||||||||||| |||| ||||| | |
|
|
| T |
31499342 |
gaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattct |
31499243 |
T |
|
| Q |
250 |
tgatccaattcggtatttcacttcctggaacaacaatatgaa |
291 |
Q |
| |
|
| | |||| | | |||||||||||||||| ||||||||||| |
|
|
| T |
31499242 |
taaaccaacttgatatttcacttcctggagtaacaatatgaa |
31499201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 150 - 362
Target Start/End: Complemental strand, 31472837 - 31472625
Alignment:
| Q |
150 |
gaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgt |
249 |
Q |
| |
|
||||||||| ||||||||| | | |||||| ||| |||| |||||||||||||| ||||| | |||| | |||| ||||||||| || | ||||||| |
|
|
| T |
31472837 |
gaaaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgt |
31472738 |
T |
|
| Q |
250 |
tgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatcca |
349 |
Q |
| |
|
||| |||| | |||||||||||||||||| |||||| |||| ||| || || ||||| |||| ||||||| ||||| ||||| |||| |||||| |
|
|
| T |
31472737 |
tgaaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatcca |
31472638 |
T |
|
| Q |
350 |
tgaaaatgtcatg |
362 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31472637 |
tgaaaatgtcatg |
31472625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 588
Target Start/End: Complemental strand, 31472509 - 31472390
Alignment:
| Q |
469 |
gagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaata |
568 |
Q |
| |
|
|||||||||||| ||||||||||| |||| | || ||| || || ||||||||||||||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
31472509 |
gagaaggaagtttaggcaaagatttcaactgcgggcgatgttctaagtttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaatt |
31472410 |
T |
|
| Q |
569 |
gtttccccctaaatttaatc |
588 |
Q |
| |
|
|| || |||| |||||||| |
|
|
| T |
31472409 |
attccctcctacatttaatc |
31472390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 364
Target Start/End: Complemental strand, 31479295 - 31479081
Alignment:
| Q |
150 |
gaaaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgt |
249 |
Q |
| |
|
||||||||| ||||||||||| |||||| | ||| |||| ||||||| |||||| ||||| | |||||| ||||| ||| |||| |||| ||||||| |
|
|
| T |
31479295 |
gaaaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgt |
31479196 |
T |
|
| Q |
250 |
tgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatcca |
349 |
Q |
| |
|
||| |||| | || |||||||| |||||| |||||| |||| | ||| | || || || || | ||| | | ||||| |||||||||| |||||| |
|
|
| T |
31479195 |
tgaaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatcca |
31479096 |
T |
|
| Q |
350 |
tgaaaatgtcatgct |
364 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31479095 |
tgaaaatgtcatgct |
31479081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 594
Target Start/End: Original strand, 31526532 - 31526569
Alignment:
| Q |
557 |
tgtcacaaaatagtttccccctaaatttaatctttcta |
594 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31526532 |
tgtcacaaaattgtttccccctaaatttaatctttcta |
31526569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 31157018 - 31157080
Alignment:
| Q |
224 |
tattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaat |
286 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||| | |||||||||||||| |||| |||||| |
|
|
| T |
31157018 |
tattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaat |
31157080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 31157172 - 31157213
Alignment:
| Q |
381 |
tcactctcagccaatttcggacagttaaaaatgaccaatcct |
422 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
31157172 |
tcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 31504317 - 31504269
Alignment:
| Q |
313 |
aggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcat |
361 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31504317 |
aggattgtgggtttgccttaatgaattgtatcatccatgaaaatgtcat |
31504269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 473 - 591
Target Start/End: Complemental strand, 6785354 - 6785236
Alignment:
| Q |
473 |
aggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagttt |
572 |
Q |
| |
|
|||||| | ||||||| ||| |||||||| ||| || ||||| ||||||||||| ||||||||||||| | || |||||| | ||||||||||| |||| |
|
|
| T |
6785354 |
aggaagatcaggcaaatatttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggttt |
6785255 |
T |
|
| Q |
573 |
ccccctaaatttaatcttt |
591 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6785254 |
ccccctaaatttaatcttt |
6785236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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