View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21114_low_4 (Length: 396)
Name: NF21114_low_4
Description: NF21114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21114_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34849735 - 34849926
Alignment:
| Q |
1 |
ataaaacatcatcaagttcatttcttattgggccaattagtgtcacttaattagcttaaattattataaaaaagtttatatattactccttatgtatcta |
100 |
Q |
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| T |
34849735 |
ataaaacatcatcaagttcatttcttattgggccaattagtgtcacttaattagcttaaattattat-aaaatgtttatatattactccttatgtatgta |
34849833 |
T |
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| Q |
101 |
atttatcaagaaaaattttgtttctatttacctgtcannnnnnnnnaagtgtagtgcaaattaactaatagtttgaactatgatatgtaatgc |
193 |
Q |
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| T |
34849834 |
atttatgaagaaaaattttgtttttatttacctgtcattttttttaaagtgtagtgcaaattaactaatagtttgaactatgatatgtaatgc |
34849926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 34849992 - 34850106
Alignment:
| Q |
259 |
ttcatttaagatagcataattttaaagcagcgattaaaagtatttgcctagagagttgtactcttttgtactgtatcatttatttgttgactatatctca |
358 |
Q |
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| T |
34849992 |
ttcatttaaaatagcataattttaaagcaacggttaaaagtatttgcctagagagttgtactcttt-----tgtatcatttatttgtcgactatatctca |
34850086 |
T |
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| Q |
359 |
atgatcatgcagaaggtcat |
378 |
Q |
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| T |
34850087 |
atgatcatgcagaaggtcat |
34850106 |
T |
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