View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21114_low_6 (Length: 280)
Name: NF21114_low_6
Description: NF21114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21114_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 36695369 - 36695620
Alignment:
| Q |
17 |
aaaaataaaagagagaaattacaagtatgagggagatgtagaggatggagaggaaaatggagttcatgttcacttttttaatatatgtggcgtgggggag |
116 |
Q |
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| T |
36695369 |
aaaaataaaagagagaaattacaagtatgagggagatgtagacgatgg------------agttcatgttcacttttttaatatatgtggcgtgggggag |
36695456 |
T |
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| Q |
117 |
acgtattatacatattatacaacattttctcacaatgatacttacttttttacgacattacaaaacctatggctgcatattcaaatccccttaatgtgtc |
216 |
Q |
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| T |
36695457 |
acgtattatacatattatacaactttttctcacaatgatacttacttttttacgacattacaaaacctatggctgcatattcaaatccccttaatgtgtc |
36695556 |
T |
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| Q |
217 |
agaatcatcaccataaccatttgctggcttccttacattgctcatattgttgtaaacttcaagc |
280 |
Q |
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| T |
36695557 |
agaatcatcaccataaccatttggtggcttcctgtcattgctcatattgttgtaaacttcaagc |
36695620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 36675743 - 36675852
Alignment:
| Q |
17 |
aaaaataaaagagagaaattacaagtatgagggagatgtagaggatggagaggaaaatggagttcatgttcacttttttaatatatgtggcgtgggggag |
116 |
Q |
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| T |
36675743 |
aaaaataatagagaaaaagtacaagtatgagggagatgtagaggatggagaggaaaatggagttcatgttcaattttttaatatat-----gtgggggag |
36675837 |
T |
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| Q |
117 |
acgtattatacatat |
131 |
Q |
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| T |
36675838 |
acatattatacatat |
36675852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 36676002 - 36676091
Alignment:
| Q |
191 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttgctggcttccttacattgctcatattgttgtaaacttcaagc |
280 |
Q |
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| T |
36676002 |
gcatattctaatccccttaatgtgtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaacttcaagc |
36676091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 36673247 - 36673336
Alignment:
| Q |
191 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttgctggcttccttacattgctcatattgttgtaaacttcaagc |
280 |
Q |
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| T |
36673247 |
gcatattctaatccccttaatctgtcagaattattaacagagctattttgtcccttccttacattgctcatattgttgtaaacttcaagc |
36673336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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