View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21115_high_2 (Length: 348)
Name: NF21115_high_2
Description: NF21115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21115_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 47707623 - 47707254
Alignment:
| Q |
6 |
cacagacattcttgttcaatgtttcatgtgtcacacagactgatatataatcaaaaggagtaattaattcgtct--------------------cttgag |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
47707623 |
cacagacattcttgttcaatgtttcatgtgtcacacagactgatacataatcaaaaggagtaattaattcgtcttagagattataaattcgtctcttgag |
47707524 |
T |
|
| Q |
86 |
gttataaagtcaaattctaaccaattttttaatttaacaaatgcagnnnnnnnnnn------ctattcttagattatgaaaatgtaaaagaactaaacta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47707523 |
gttataaagtcaaattctaaccaattttttaatttaacaaatgcagaaaagaaaaaaaaaaactattcttagattatgaaaatgcaaaagaactaaacta |
47707424 |
T |
|
| Q |
180 |
-cttaatttaccttcttctatacatctttgttggtgctttccatcttgctggcttaattgttcataaggtaacaaaaagaattaacatgtcannnnnnna |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
47707423 |
acttaatttaccttcttctatacatctttgttggtgctttccatcttgctggcttaattgttcataaggtaacaaaaagaactaacatgtcattttttta |
47707324 |
T |
|
| Q |
279 |
gctatgatcaaatttaaaatttacttaaaccagaatttgagttcacttcatatcatacctttgcattctc |
348 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47707323 |
gctatgatcaaatttaaaatttacgtaaaccagaatttgagttcacttcatatcatacctttgcattctc |
47707254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University