View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21115_low_1 (Length: 413)
Name: NF21115_low_1
Description: NF21115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21115_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 400
Target Start/End: Original strand, 45724876 - 45725254
Alignment:
| Q |
22 |
tgagcattaagtttcattattaagcaatcacacaaaccaaagtagtgacagagagannnnnnnnnnnnntggaagaaggaaaagaacaacaagttgcaaa |
121 |
Q |
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| T |
45724876 |
tgagcattaagtttcattattaagcaatcacacaaaccaaagtagtgacagagagaacacacacacacatggaagaaggaaaagaacaacaagttgcaaa |
45724975 |
T |
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| Q |
122 |
gnnnnnnntgaataaattccttctgatactaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggc |
221 |
Q |
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| T |
45724976 |
gaaaaaaatgaataaattccttctgatagtaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggc |
45725075 |
T |
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| Q |
222 |
ggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgcc |
321 |
Q |
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| T |
45725076 |
ggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgcc |
45725175 |
T |
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| Q |
322 |
acaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaagtataatctccatgaaaccacctatattctt |
400 |
Q |
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| T |
45725176 |
acaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaaatataatctccatgaaaccacctattttctt |
45725254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 137 - 402
Target Start/End: Original strand, 45729180 - 45729445
Alignment:
| Q |
137 |
attccttctgatactaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctgg |
236 |
Q |
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| T |
45729180 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctgg |
45729279 |
T |
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| Q |
237 |
ctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccat |
336 |
Q |
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| T |
45729280 |
ctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccaccaccatcctccaccat |
45729379 |
T |
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| Q |
337 |
ccaacaccatctccatcgcctcagaaaaacaaagtataatctccatgaaaccacctatattcttcg |
402 |
Q |
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| T |
45729380 |
tgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcg |
45729445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 45729053 - 45729108
Alignment:
| Q |
19 |
atctgagcattaagtttcattat---taagcaatcacacaaaccaaagtagtgaca |
71 |
Q |
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| T |
45729053 |
atctgagcattaagtttcattattaataagcaattacacaaatcaaagtagtgaca |
45729108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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