View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21115_low_3 (Length: 247)
Name: NF21115_low_3
Description: NF21115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21115_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 2331528 - 2331411
Alignment:
| Q |
19 |
ataaaccaacttgaatatacaaacatacaatagcatactttttcacattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataaga |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2331528 |
ataaaccaacttgaatatacaaacaaacaatagcatactttttcacattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataaga |
2331429 |
T |
|
| Q |
119 |
aacaagatatgtaagaat |
136 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2331428 |
aacaagatatgtaagaat |
2331411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 2327317 - 2327432
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatg |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2327317 |
agaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccggagggtggccatg |
2327416 |
T |
|
| Q |
232 |
tcgatttgtcggaaaa |
247 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2327417 |
tcgatttgtcagaaaa |
2327432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 2351338 - 2351453
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatg |
231 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2351338 |
agaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatg |
2351437 |
T |
|
| Q |
232 |
tcgatttgtcggaaaa |
247 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2351438 |
ttgatttgtcggaaaa |
2351453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 2331032 - 2331126
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtgg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2331032 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttcccgagggtgg |
2331126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 2310479 - 2310594
Alignment:
| Q |
131 |
aagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccat |
230 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
2310479 |
aagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcat |
2310578 |
T |
|
| Q |
231 |
gtcgatttgtcggaaa |
246 |
Q |
| |
|
|| |||||| |||||| |
|
|
| T |
2310579 |
gttgatttgacggaaa |
2310594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 2294148 - 2294263
Alignment:
| Q |
131 |
aagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccat |
230 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
2294148 |
aagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaaggttccagagggcgggcat |
2294247 |
T |
|
| Q |
231 |
gtcgatttgtcggaaa |
246 |
Q |
| |
|
|| |||||| |||||| |
|
|
| T |
2294248 |
gttgatttgacggaaa |
2294263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 2303762 - 2303877
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatg |
231 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
2303762 |
agaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagcttccagagggcggctatg |
2303861 |
T |
|
| Q |
232 |
tcgatttgtcggaaaa |
247 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2303862 |
ttgatttgtcggaaaa |
2303877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 2321464 - 2321579
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggtggccatg |
231 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| || |||| ||||||||||||| |
|
|
| T |
2321464 |
agaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagcttccggagggtggccatg |
2321563 |
T |
|
| Q |
232 |
tcgatttgtcggaaaa |
247 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2321564 |
ttgatttgtcggaaaa |
2321579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 2321884 - 2321812
Alignment:
| Q |
63 |
acattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataagaaacaagatatgtaagaa |
135 |
Q |
| |
|
|||||||| |||||||| ||| |||||| | || |||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2321884 |
acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa |
2321812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 2304283 - 2304240
Alignment:
| Q |
93 |
ccatgcatgttttattttatataagaaacaagatatgtaagaat |
136 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
2304283 |
ccatgcatgttttattttatacaagaaacaagatatataagaat |
2304240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 2339388 - 2339305
Alignment:
| Q |
52 |
catactttttcacattgaatgtatcttggcttgcaagaaggccatgcatgttttattttatataagaaacaagatatgtaagaat |
136 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||| | |||| |||| |||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
2339388 |
catacttttttatattgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaat |
2339305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 41127344 - 41127462
Alignment:
| Q |
132 |
agaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaggg---tggcc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| ||| |||||| ||| |
|
|
| T |
41127344 |
agaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagagggagctggtt |
41127443 |
T |
|
| Q |
229 |
atgtcgatttgtcggaaaa |
247 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
41127444 |
atgttgatttgtcggaaaa |
41127462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University