View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21116_high_1 (Length: 360)
Name: NF21116_high_1
Description: NF21116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21116_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 39296250 - 39295904
Alignment:
| Q |
1 |
tgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgt |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296250 |
tgatcgtgagaacgagagaatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgt |
39296151 |
T |
|
| Q |
101 |
tttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296150 |
tttgattctaagagaaacacaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagg |
39296051 |
T |
|
| Q |
201 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39296050 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacca |
39295951 |
T |
|
| Q |
301 |
agaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39295950 |
agaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
39295904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39289367 - 39289022
Alignment:
| Q |
1 |
tgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgt |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39289367 |
tgatcgtgagtacgagagaataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgt |
39289268 |
T |
|
| Q |
101 |
tttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
39289267 |
tttgattctaagagaaacacaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctaga |
39289168 |
T |
|
| Q |
201 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289167 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaacca |
39289068 |
T |
|
| Q |
301 |
agaacagtcctttgtacactgtgcaaccttgatccagcagaataat |
346 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
39289067 |
agaatagtcctttgtaaactgtgaaaccttgatctagcagaataat |
39289022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University