View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21116_low_1 (Length: 767)

Name: NF21116_low_1
Description: NF21116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21116_low_1
NF21116_low_1
[»] chr8 (1 HSPs)
chr8 (36-767)||(8896936-8897667)


Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 36 - 767
Target Start/End: Original strand, 8896936 - 8897667
Alignment:
Q  36 aattactatgactatagcgcctaccatcactagaagttcttgaattcttagtaaccgcatttgaaataacctctccaacattgccacaactattaatatg 135  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8896936 aattactatgattatagcgcctaccatcactagaagttcttgaattcttagtaaccgcatttgaaatagcctctccaacattgccacgactattaatatg 8897035  T
Q  136 atttgaagcatgacaaaagtcattgccaaaaccctgaccagcactaggagaatcatgcactgcatgatccaaatcagnnnnnnnagcaaggttttggttg 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||    
T  8897036 atttgaagcatgacaaaagtcattgccaaaaccctgaccagcactaggagaatcatgcactgcatgatccaaatcagttttttcagtaaggttttggttg 8897135  T
Q  236 tgaaaactgtagttagcgtcataacagcaattatgatgatgttctgaattgtgactttcaggattggactgggaggaggaacttgatggaaagggagagc 335  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8897136 tgaaaactgtagttagcgtcataacagcaattatgatcatgttctgaattgtgactttcaggattggactgggaggaggaacttgatggaaagggagagc 8897235  T
Q  336 tctctttttggcaatttgatttaggagtcaacatgtgatggaaaacattatcagctgagagtccaagttgttcatactgagccatgactgcagtggtcat 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8897236 tctctttttggcaatttgatttaggagtcaacatgtgatggaaaacattatcagctgagagtccaagttgttcatactgagccatgactgcagtggtcat 8897335  T
Q  436 attttccattttaattgagccagcatactgaaaacaattaccagcagtaactacagatagttcctgagacttattagaattccaattggagttttgaaga 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8897336 attttccattttaattgagccagcatactgaaaacaattaccagcagtaactacagatagttcctgagacttattagaattccaattggagttttgaaga 8897435  T
Q  536 agtggctgcaacatcttactgccatcatacctgcatgtagaaattttgccggtcattattagaagnnnnnnnnctataatagaagaacaatattgcatgt 635  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  8897436 agttgctgcaacatcttactgccatcgtacctgcatgtagaaattttgccggtcattattagaagaaaaaaaaatataatagaagaacaatattgcatgt 8897535  T
Q  636 tgatttttgagtaaagctatatgaaaaatactactaaattaaattattatatactgatttctcattatgcaataatacaagctgaaaatcaaatctaaac 735  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8897536 tgatttttgagtaaagctatatgaaaaatactactaaattaaattattatatactgatttctcattatgcaataatacaagctgaaaatcaaatctaaac 8897635  T
Q  736 ggttcgtaaaaagatgactggatacataaact 767  Q
    ||||||||||||||||||| ||||||||||||    
T  8897636 ggttcgtaaaaagatgacttgatacataaact 8897667  T

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