View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21116_low_6 (Length: 239)
Name: NF21116_low_6
Description: NF21116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21116_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 9337052 - 9337232
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9337052 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggctaataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
9337151 |
T |
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| Q |
119 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
199 |
Q |
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| T |
9337152 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
9337232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 8666426 - 8666246
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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|||||||||| || ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8666426 |
atctggaggagctggagagaatgtcgaaacaccttatatccaaggctaataattttatttttcttggataagattttaagtgatgtcttgcttttgaaag |
8666327 |
T |
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| Q |
119 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
199 |
Q |
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| T |
8666326 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
8666246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 8672230 - 8672410
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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|||||||||| || ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8672230 |
atctggaggagctggagagaatgtcgaaacaccttatatccaaggctaataattttatttttcttggataagattttaagtgatgtcttgcttttgaaag |
8672329 |
T |
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| Q |
119 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
199 |
Q |
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| T |
8672330 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
8672410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 10495532 - 10495711
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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|||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
10495532 |
atctggaggagctggagagcatgtcgaaacaccttatatccaagactaataattttatttttctttgataagatttaaagtgaagtcttgcttttgaaag |
10495631 |
T |
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| Q |
119 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgttac |
199 |
Q |
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| T |
10495632 |
tgctgaatgcaga-ctttgtttttattatcattatctaatagtattgaagtttatgataatatttgtgtttaacatattac |
10495711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 13334526 - 13334701
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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|||| ||||| || |||||||||||||| ||||| ||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
13334526 |
atctcgaggagctggagagcatgtcgaaacacctgatatcaaagactaataattttatttttctgtgataagatttgaagtgatgtcttgcttttgaaag |
13334625 |
T |
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| Q |
119 |
tgctgaatgcagacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtttcacat |
194 |
Q |
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| T |
13334626 |
tgctgaatgcaaacttttagttttattatcattatctaatagcattgaagtttatgataatgtttctgtttaacat |
13334701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 29214752 - 29214922
Alignment:
| Q |
19 |
atctggaggatctagagagcatgtcgaagcaccttatatccaaggataataattttatttttcttggataagatttaaagtgatgtcttgcttttgaaat |
118 |
Q |
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|||| ||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| |
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| T |
29214752 |
atctcgaggagctggagagcatgtcgaaacaccttatatccaagactaataattttattttcctttgttaagatttaaagtgatgccttgcttttgaaat |
29214851 |
T |
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| Q |
119 |
tgctgaatgc-agacctttagttttattatcattatctaatagcattgaagtttatgttaatgtttgtgtt |
188 |
Q |
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|||||||||| | ||||||| ||||||||||||| |||| |||||| |||| ||||| ||||||||||||| |
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| T |
29214852 |
tgctgaatgcaaaacctttaattttattatcattgtctagtagcatcgaaggttatgataatgtttgtgtt |
29214922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 29464812 - 29464761
Alignment:
| Q |
147 |
tcattatctaatagcattgaagtttatgttaatgtttgtgtttcacatgtta |
198 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||| |||||||| |
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| T |
29464812 |
tcattatctaatagcattgaagtttatggcaatgtatgtgttgaacatgtta |
29464761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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