View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21117_high_1 (Length: 693)
Name: NF21117_high_1
Description: NF21117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21117_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 54251743 - 54252239
Alignment:
| Q |
16 |
atagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgcacctcaaag |
115 |
Q |
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| T |
54251743 |
atagagtaaaagagacagatgtaaaggctgacaataaaaatgaaacggtaataaaacagtgtttggatgttgaagtgtctgtgtagtctgtacctcaaag |
54251842 |
T |
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| Q |
116 |
ggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctcctcttctc |
215 |
Q |
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| T |
54251843 |
ggaccctccaaatttaaagcattactgactcaaatcctacaccattaggtgcatccctatttactgcaaaatattgtagaaacccaaagctcctcttctc |
54251942 |
T |
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| Q |
216 |
tccaacgaagaaaatgaaatgtctccttctttcccttttcttttccccctagaaatttggccttcaatccaagacaagacccaggcacaaaggtgaaaag |
315 |
Q |
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| T |
54251943 |
tccaacgaagaaaatgaaatgtctccttctttcctttttcttttccccctagaaatctggccttcaatccaagacaagacccaggcacaaaggtgaaaag |
54252042 |
T |
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| Q |
316 |
tatttactaaaattaatcaatttttcttgacaannnnnnnaacaaactgaattatggaataattatctaaaataccaataatttcaccaaatccaaaaat |
415 |
Q |
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| T |
54252043 |
tatttactaaaattaatcaatttttcttgacaatttttttaacaaactgaattatggaataattatctaaaataccaataatttcaccaaatccaaaaat |
54252142 |
T |
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| Q |
416 |
catcaagcaaacacaataatgatcactatttcgtttacataaagcctaagatcaaacttcaaattcttcatttattcatctatttatgctatttgac |
512 |
Q |
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| T |
54252143 |
catcaagcaaacacaataatgatcactatttcgtttacatagagcctaagttcaaacttcaaattcttcatttattcatctatttatgctatttgac |
54252239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 634 - 675
Target Start/End: Original strand, 54252368 - 54252409
Alignment:
| Q |
634 |
ccagtatcactaagctaacagattgagccgtgtagccaatat |
675 |
Q |
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| T |
54252368 |
ccagtatcactaagctaacagattgagccgtgtagccaatat |
54252409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 552
Target Start/End: Original strand, 54252257 - 54252286
Alignment:
| Q |
523 |
ttataataataataatcactcattgcatat |
552 |
Q |
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| T |
54252257 |
ttataataataataatcactcattgcatat |
54252286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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