View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21117_low_12 (Length: 216)
Name: NF21117_low_12
Description: NF21117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21117_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 36676105 - 36675922
Alignment:
| Q |
14 |
caaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36676105 |
caaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacacattaaggggattagaat |
36676006 |
T |
|
| Q |
114 |
atgcttcttctattcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtcggaaaaaagtaatgttagtct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36676005 |
atgcttcttctattcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtctgaaaaaagtaatgttagtct |
36675922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 36673350 - 36673200
Alignment:
| Q |
14 |
caaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || |||||||||| |||| | |||| | || |||||||| ||||||||||||||||| |
|
|
| T |
36673350 |
caaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaat |
36673251 |
T |
|
| Q |
114 |
atgcttcttctattcctatggacgaaattgtcgagttttaaataattagatc |
165 |
Q |
| |
|
||||| |||| ||| |||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
36673250 |
atgctacttcaattactatagacgaaattgttgag-tttaaataataagatc |
36673200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 36695634 - 36695531
Alignment:
| Q |
14 |
caaaggccaacaatgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaat |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || | |||||| ||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36695634 |
caaaggtcaacaatgcttgaagtttacaacaatatgagcaatgacaggaagccaccaaatggttatggtgatgattctgacacattaaggggatttgaat |
36695535 |
T |
|
| Q |
114 |
atgc |
117 |
Q |
| |
|
|||| |
|
|
| T |
36695534 |
atgc |
36695531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 36683781 - 36683744
Alignment:
| Q |
14 |
caaaggccaacaatgcttgaagtttacaacaatatgag |
51 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
36683781 |
caaagaccaacaatgcttgaagtttacaacaatttgag |
36683744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University