View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21117_low_13 (Length: 205)
Name: NF21117_low_13
Description: NF21117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21117_low_13 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5848112 - 5848299
Alignment:
| Q |
18 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
117 |
Q |
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| T |
5848112 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
5848211 |
T |
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| Q |
118 |
tgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgt |
205 |
Q |
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| T |
5848212 |
tgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgt |
5848299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5841402 - 5841589
Alignment:
| Q |
18 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
117 |
Q |
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| T |
5841402 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
5841501 |
T |
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| Q |
118 |
tgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgt |
205 |
Q |
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| T |
5841502 |
tgataacctgagggcatcaatgtaattatccaattggttagtttccatattttgaccttgtggataaataatactaagagcttcatgt |
5841589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5847556 - 5847743
Alignment:
| Q |
18 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
117 |
Q |
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| T |
5847556 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
5847655 |
T |
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| Q |
118 |
tgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgt |
205 |
Q |
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| T |
5847656 |
tgataacctgagggcatcaatgtaattatccaattggttagtttccatattttgaccttgtggataaataatactaagagcttcatgt |
5847743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 5885726 - 5885908
Alignment:
| Q |
18 |
ataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatggcaa |
117 |
Q |
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|||| ||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5885726 |
ataacagatctacacactcttgacaaaactatggcttccatcctaaaggactactagggtttgt-----aattaactgtttggctgcttgatgatggcaa |
5885820 |
T |
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| Q |
118 |
tgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgt |
205 |
Q |
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| T |
5885821 |
tgataacctgagggcatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgt |
5885908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 5920055 - 5920100
Alignment:
| Q |
148 |
caattggttagcttccatattttgaccttgtggataaataatacta |
193 |
Q |
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| T |
5920055 |
caattgattatcttccatattttgatcttgtggataagtaatacta |
5920100 |
T |
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