View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21117_low_5 (Length: 294)
Name: NF21117_low_5
Description: NF21117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21117_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 43504888 - 43505152
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcagtataaaaaaccacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504888 |
aatatttttcccgatttttagcatgagtggtcagtacaaaaaaacacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacaca |
43504987 |
T |
|
| Q |
113 |
attttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaannnnnnnnaatgac |
212 |
Q |
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| T |
43504988 |
attttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaattgtttttaatgac |
43505087 |
T |
|
| Q |
213 |
atcttatttttaccttaatttgtatcctctactttgaagagagatattttaagggatagacaaaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43505088 |
atcttatttttaccttaatttgtatcctctactttgaagagagatattttaagggatagacaaaa |
43505152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 39070594 - 39070859
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcagtataaaaaac-cacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacac |
111 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39070594 |
aatatttttcccgatttttagcatgagtggttggtacaaaaaaaacacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacac |
39070693 |
T |
|
| Q |
112 |
aattttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaannnnnnnnaatga |
211 |
Q |
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| T |
39070694 |
aatttatgtgtaaatttttctaggcttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaatttgtttacaattttttttaatga |
39070793 |
T |
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| Q |
212 |
catcttatttttaccttaatttgtatcctctactttgaagagagatattttaagggatagacaaaa |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39070794 |
catcttatttttaccttaatttgtatcctctactttgaagagagatatttgaagggatagacaaaa |
39070859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 349070 - 348814
Alignment:
| Q |
13 |
aatatttttcccgatttttagcatgagtggtcagtataaaaaaccacatatgagtagtgggaggagctttaaaaatgaatatggtaaaaggagttacaca |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||| |||||||||| | |||||||||||| | |
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| T |
349070 |
aatatttatcccgatttttagcatgagtggtcggtacaaaaaaacacat-tgagtagtgggaggagct-----aatgaatatgtttaaaggagttaca-a |
348978 |
T |
|
| Q |
113 |
attttcgtgtaaatttttctagacttcaatgattcaaacaatttttacttgaataaatagtcctttcacaactaa-tttgtttacaannnnnnnnaatga |
211 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||| ||| ||||||| ||||| |
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| T |
348977 |
attttcgcttaaatttttctagacttcaatggttcaaacaatttttacttgtataaattgttctttcacaactaattttttttacaattatttttaatga |
348878 |
T |
|
| Q |
212 |
catcttatttttaccttaatttgtatcctctactttgaagagagatattttaagggatagacaaaa |
277 |
Q |
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|||| ||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
348877 |
catcatatttttacctgaatatgtatcctctaccatga--agagatattttaagggatagacaaaa |
348814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 30087605 - 30087648
Alignment:
| Q |
234 |
gtatcctctactttgaagagagatattttaagggatagacaaaa |
277 |
Q |
| |
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|||||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
30087605 |
gtatcctctagtgtgaagagagttattttaagggatagacaaaa |
30087648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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