View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21118_low_1 (Length: 568)
Name: NF21118_low_1
Description: NF21118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21118_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 14672710 - 14672173
Alignment:
| Q |
20 |
aacagtaaccgctgatagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaacattacatca |
119 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14672710 |
aacagtaaccgctgatagtatcgtgcttctcaataatttcaatttcacgaactataatagctctcatttgatgaaggagtagtcaatcaacattacatca |
14672611 |
T |
|
| Q |
120 |
gacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672610 |
gacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaa |
14672511 |
T |
|
| Q |
220 |
tagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtacagagtcagtattggtggtgcatctttgagtga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14672510 |
tagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtggtgcatctttgagtga |
14672411 |
T |
|
| Q |
320 |
caaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctaca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672410 |
caaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctaca |
14672311 |
T |
|
| Q |
420 |
ataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgatttaagttggcacttca |
519 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672310 |
ataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgatttaagttggcacttca |
14672211 |
T |
|
| Q |
520 |
ttgtagatccgaacttcatgtattttgttcgggttcat |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14672210 |
ttgtagatccgaacttcatgtattttgttcgggttcat |
14672173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 14678088 - 14677551
Alignment:
| Q |
20 |
aacagtaaccgctgatagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaacattacatca |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14678088 |
aacagtaaccgctgatagtatcgtgcttctcaataatttcaatttcacgaactataatagctctcatttgatgaaggagtagtcaatcaacattacatca |
14677989 |
T |
|
| Q |
120 |
gacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677988 |
gacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagttatctctataccagatgacctcttccctgaccaaa |
14677889 |
T |
|
| Q |
220 |
tagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtacagagtcagtattggtggtgcatctttgagtga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14677888 |
tagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtccagagtcagtattggtggtgcatctttgagtga |
14677789 |
T |
|
| Q |
320 |
caaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctaca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677788 |
caaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagttctgatcttgttgtttctactaaccctgctaca |
14677689 |
T |
|
| Q |
420 |
ataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcacagtcacagcgatccgatttaagttggcacttca |
519 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677688 |
ataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcacagtcacagcgatccgatttaagttggcacttca |
14677589 |
T |
|
| Q |
520 |
ttgtagatccgaacttcatgtattttgttcgggttcat |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
14677588 |
ttgtagatccgaacttcatgtattttgttcgggttcat |
14677551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 14687414 - 14687333
Alignment:
| Q |
29 |
cgctgatagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaac |
110 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
14687414 |
cgctgatagtttcgtgcttctcaataacatcactttcatgaactatatcagctctcatttgatgaaggagtatgcaaccaac |
14687333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 14666240 - 14666309
Alignment:
| Q |
23 |
agtaaccgctgatagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatg |
92 |
Q |
| |
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||||| |||||||||| | || |||||||||||| ||||||||| |||||||| |||||||| ||||||| |
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| T |
14666240 |
agtaatcgctgatagtttcgtacttctcaataacatcactttcatgaactatattagctctcttttgatg |
14666309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 30734920 - 30734834
Alignment:
| Q |
23 |
agtaaccgctgatagtattgtgcttctcaataacttcactttcacgaactataatagctctcatttgatgaaggagtattcaatcaa |
109 |
Q |
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||||| |||||||||| | ||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
30734920 |
agtaatcgctgatagtttcgtgcttctcaataacatcactttcatgaactatattagctctcttttgatgaaggagtatgcaatcaa |
30734834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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