View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21118_low_2 (Length: 471)

Name: NF21118_low_2
Description: NF21118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21118_low_2
NF21118_low_2
[»] chr3 (2 HSPs)
chr3 (214-453)||(49124225-49124464)
chr3 (1-221)||(49123951-49124171)
[»] chr4 (1 HSPs)
chr4 (55-162)||(4271421-4271528)
[»] chr1 (1 HSPs)
chr1 (55-162)||(2807765-2807872)
[»] chr6 (4 HSPs)
chr6 (403-453)||(11683284-11683336)
chr6 (315-363)||(11683218-11683266)
chr6 (401-454)||(18988479-18988534)
chr6 (315-384)||(18988416-18988485)
[»] chr8 (2 HSPs)
chr8 (401-453)||(30341232-30341286)
chr8 (315-383)||(30341281-30341349)
[»] chr5 (2 HSPs)
chr5 (401-454)||(23916990-23917045)
chr5 (315-384)||(23917039-23917108)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 214 - 453
Target Start/End: Original strand, 49124225 - 49124464
Alignment:
Q  214 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124225 attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag 49124324  T
Q  314 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagtttagattttctttagttgaaagtacaaaa 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124325 ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaagaaagtttagattttctttagttgaaagtacaaaa 49124424  T
Q  414 gtgggagagatttgagatgttgaagagagattctcttaag 453  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49124425 gtgggagagatttgagatgttgaagagagattctcttaag 49124464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49123951 - 49124171
Alignment:
Q  1 actttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatttgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49123951 actttggtgaataaaatactttgtggaagaagataaaatatatagtaaattcagttttttaccttggcattgaagtttgcatctaaaagaatatttgaag 49124050  T
Q  101 atttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgtgttaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124051 atttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatatgttaagtgtgttaa 49124150  T
Q  201 catagattttaatattcataa 221  Q
    |||||||||||||||||||||    
T  49124151 catagattttaatattcataa 49124171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 4271528 - 4271421
Alignment:
Q  55 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 154  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  4271528 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 4271429  T
Q  155 atcctctg 162  Q
    | ||||||    
T  4271428 aacctctg 4271421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 2807872 - 2807765
Alignment:
Q  55 ttttttaccttggcattgaagtttgcatctaaaagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattcta 154  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||  |||||| || |||||||| ||||||| ||    
T  2807872 ttttttaccttggcattgaagtttgcatctaaaagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatatttta 2807773  T
Q  155 atcctctg 162  Q
    | ||||||    
T  2807772 aacctctg 2807765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 453
Target Start/End: Original strand, 11683284 - 11683336
Alignment:
Q  403 aaagtacaaaagtgggaga--gatttgagatgttgaagagagattctcttaag 453  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  11683284 aaagtacaaaagtgggagagagatttgagatgttgaagagagattctcttaag 11683336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
Q  315 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc 363  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  11683218 tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc 11683266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 18988479 - 18988534
Alignment:
Q  401 tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaagt 454  Q
    |||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||    
T  18988479 tgaaagtacaaaagtgcgagagaggtttgagatgttgaagagaaattctcttaagt 18988534  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 18988416 - 18988485
Alignment:
Q  315 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt 384  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || ||||||    
T  18988416 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt 18988485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 453
Target Start/End: Complemental strand, 30341286 - 30341232
Alignment:
Q  401 tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaag 453  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  30341286 tgaaagcacaaaagtgggagagaggtttgagatgttgaagagagattctcttaag 30341232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 30341349 - 30341281
Alignment:
Q  315 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaag 383  Q
    |||||||||||| |||||| |||||||||| ||||| ||||||| |||| |||||||||| || |||||    
T  30341349 tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaag 30341281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 23917045 - 23916990
Alignment:
Q  401 tgaaagtacaaaagtgggagaga--tttgagatgttgaagagagattctcttaagt 454  Q
    |||||||||||||||| ||||||  |||||||||||||||||| ||||||||||||    
T  23917045 tgaaagtacaaaagtgcgagagaggtttgagatgttgaagagaaattctcttaagt 23916990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 23917108 - 23917039
Alignment:
Q  315 tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaagaaagt 384  Q
    |||||||||||| |||| | |||||||||| ||||| ||||||| |||| |||||||||| || ||||||    
T  23917108 tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacattgcatgaaagt 23917039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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