View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21118_low_3 (Length: 455)
Name: NF21118_low_3
Description: NF21118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21118_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 96 - 442
Target Start/End: Complemental strand, 52050840 - 52050493
Alignment:
| Q |
96 |
tcaacacaaggtaatgcaagttctaattcaaatcaacaatgatttttgaacatgtttaattttctaacactcattcaatgtatatttcttactctcccaa |
195 |
Q |
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| T |
52050840 |
tcaacacaaggtaatgcaagttctaattcaaatcaacaatgatttttgaacatgtttaattttctaacactcattcaatgtatatttcttactctcccat |
52050741 |
T |
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| Q |
196 |
agagtattatgggtgttcaaataacaattttcaatccaaatattgttttgtactttaatagtggttagaggtcagacagtgtgacctttattgagtcagt |
295 |
Q |
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| T |
52050740 |
agagtattatgggtgttcaaataacaattttcaatccaaatattgttttgtactttaatagtggttagtggtcagacagtgtgacctttattgagtcagt |
52050641 |
T |
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| Q |
296 |
aacatggtaatggaacttatgtttaccctggaggttgaagatcatgcctacagaaacactgt-aaataccaaattttagctagacctgtactaattgaat |
394 |
Q |
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| T |
52050640 |
aacatggtaatggaacttatgtttaccctggaggttgaagatcatgcctacagaaacactgtaaaataccaaattttagctagacctgtactaattgaat |
52050541 |
T |
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| Q |
395 |
atgaaacagccctcacatgcttacataaaataatataccataaaactg |
442 |
Q |
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| T |
52050540 |
atgaaacagccctcacatgcttacataaaataatataccataaaactg |
52050493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 52050947 - 52050907
Alignment:
| Q |
13 |
aatattttaactagggttattttgtattgtcctatagctag |
53 |
Q |
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| T |
52050947 |
aatattttaactagggttattttgtattgtcctatagctag |
52050907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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