View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21119_high_15 (Length: 326)

Name: NF21119_high_15
Description: NF21119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21119_high_15
NF21119_high_15
[»] chr4 (8 HSPs)
chr4 (44-317)||(38970912-38971185)
chr4 (199-305)||(7623727-7623833)
chr4 (199-305)||(10801320-10801426)
chr4 (58-134)||(10801212-10801288)
chr4 (58-134)||(10996301-10996377)
chr4 (199-305)||(10996163-10996269)
chr4 (78-136)||(7623863-7623921)
chr4 (43-99)||(13089065-13089121)
[»] chr2 (5 HSPs)
chr2 (44-317)||(35595341-35595614)
chr2 (44-317)||(4966711-4966984)
chr2 (44-199)||(37390683-37390838)
chr2 (207-317)||(37391048-37391158)
chr2 (44-77)||(37390423-37390456)
[»] chr5 (8 HSPs)
chr5 (44-317)||(37572380-37572653)
chr5 (44-317)||(33889382-33889655)
chr5 (199-305)||(34608805-34608911)
chr5 (199-305)||(22125066-22125172)
chr5 (78-137)||(22124963-22125022)
chr5 (58-137)||(34608955-34609034)
chr5 (58-137)||(5021950-5022029)
chr5 (199-287)||(5022073-5022161)
[»] chr7 (3 HSPs)
chr7 (44-317)||(7303615-7303888)
chr7 (44-317)||(18339498-18339771)
chr7 (199-305)||(6052765-6052871)
[»] chr6 (2 HSPs)
chr6 (44-317)||(13509873-13510146)
chr6 (72-317)||(4446853-4447098)
[»] chr3 (2 HSPs)
chr3 (44-317)||(33906554-33906827)
chr3 (22-50)||(8957067-8957095)
[»] scaffold0029 (2 HSPs)
scaffold0029 (199-305)||(59145-59251)
scaffold0029 (58-134)||(59037-59113)
[»] chr8 (4 HSPs)
chr8 (58-134)||(15742301-15742377)
chr8 (201-305)||(28953689-28953793)
chr8 (58-137)||(28953839-28953918)
chr8 (199-305)||(15742163-15742269)
[»] scaffold0014 (1 HSPs)
scaffold0014 (199-305)||(19228-19334)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 38970912 - 38971185
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38970912 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 38971011  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38971012 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 38971111  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38971112 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 38971185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 7623833 - 7623727
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| ||||||||| |||||||| |  | |||||    
T  7623833 gaagcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaactttctccaagtgtt 7623734  T
Q  299 tcttcac 305  Q
    |||||||    
T  7623733 tcttcac 7623727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 10801320 - 10801426
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| ||  |||||||||| ||||||  |||||| |||||  ||||||||||||||| ||||||||| |||||||| |  | |||||    
T  10801320 gaagcttgtgcattgactcccgccccaaaattttgaaactgttcaccgttataaatccaaacccaataatcaggcataaatccaactttttccaagtgtt 10801419  T
Q  299 tcttcac 305  Q
    |||||||    
T  10801420 tcttcac 10801426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 10801212 - 10801288
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattg 134  Q
    |||||||||||||| |||  ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||    
T  10801212 tcatcttcaacatcatcattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattg 10801288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 10996377 - 10996301
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattg 134  Q
    |||||||||||||| |||  ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||    
T  10996377 tcatcttcaacatcatcattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattg 10996301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 10996269 - 10996163
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| ||  |||||||||| |||||   |||||| |||||  ||||||||||||||| ||||||||| |||||||| |  | |||||    
T  10996269 gaagcttgtgcattgactcccgccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaactttttccaagtgtt 10996170  T
Q  299 tcttcac 305  Q
    |||||||    
T  10996169 tcttcac 10996163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 7623921 - 7623863
Alignment:
Q  78 gtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgtt 136  Q
    ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||||    
T  7623921 gtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattgtt 7623863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 13089121 - 13089065
Alignment:
Q  43 agttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaa 99  Q
    ||||||||| ||  ||||||||||||||| ||  ||||||||||||||||| |||||    
T  13089121 agttgttcccctcgatcatcttcaacatcatcgtcgtaagacaattccaccactaaa 13089065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 35595614 - 35595341
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595614 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 35595515  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595514 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 35595415  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35595414 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 35595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 4966711 - 4966984
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4966711 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgatctgtgtt 4966810  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4966811 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctgccccaaaattctgaaacatttca 4966910  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4966911 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 4966984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 37390683 - 37390838
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37390683 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 37390782  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtag 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37390783 gacatcttcattgtattccacatttgtttccacatttgttccaccatggccagtag 37390838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 37391048 - 37391158
Alignment:
Q  207 tgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcaca 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||| |||||||||||||    
T  37391048 tgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaagtataaaatcaactttttttaagtgtttcttcaca 37391147  T
Q  307 tctccaggatc 317  Q
    |||||||||||    
T  37391148 tctccaggatc 37391158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 37390423 - 37390456
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcacc 77  Q
    |||||||||||||||||||||||||||| |||||    
T  37390423 gttgttcctcttcatcatcttcaacatcatcacc 37390456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 37572380 - 37572653
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37572380 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgtt 37572479  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37572480 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 37572579  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37572580 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 37572653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 33889382 - 33889655
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33889382 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgtt 33889481  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33889482 gacatcttcattgtattccacatttgtttccacatttgtttcaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 33889581  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33889582 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 33889655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 34608911 - 34608805
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| || |||||||||||||||||   |||||| |||||  ||||||||||||||| ||||||||| |||||||| |  | |||||    
T  34608911 gaagcttgtgcattgactcccaccccaaaattctgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaactttctccaagtgtt 34608812  T
Q  299 tcttcac 305  Q
    |||||||    
T  34608811 tcttcac 34608805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 22125066 - 22125172
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| | ||||||| |||||||| |  | |||||    
T  22125066 gaagcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcatgcataaatccaactttctccaagtgtt 22125165  T
Q  299 tcttcac 305  Q
    |||||||    
T  22125166 tcttcac 22125172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 22124963 - 22125022
Alignment:
Q  78 gtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 137  Q
    ||||||||||||||| |||||||| || || |||||||||| ||||||||||||||||||    
T  22124963 gtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattgttc 22125022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 34609034 - 34608955
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 137  Q
    ||||||||||| || | |  ||||||||||||||| |||||||| || || |||||||||| ||||||||||||||||||    
T  34609034 tcatcttcaacgtcattattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattgttc 34608955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 5021950 - 5022029
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 137  Q
    ||||||||||| || | |  ||||||||||||||  |||||||| || || |||||||||| ||||||||||||||||||    
T  5021950 tcatcttcaacgtcattattgtaagacaattccatacctaaagcatcagcgaccatatcattcatcatgttgaattgttc 5022029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 5022073 - 5022161
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacttt 287  Q
    ||||||||||||||||| || ||||||||| | |||||   |||||| |||||  ||||||||||||||| | ||||||| | ||||||    
T  5022073 gaagcttgtgcattgactcccaccccaaaaatttgaaattgttcaccgttataaatccaaacccaataatcaagcataaatcaaacttt 5022161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 7303615 - 7303888
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7303615 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgtt 7303714  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7303715 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 7303814  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7303815 ccattatatgtccaaatccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 7303888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 18339498 - 18339771
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18339498 gttgttcctcttcatcatcttcaacatcttcaccataagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 18339597  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18339598 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 18339697  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  18339698 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatccccaggatc 18339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 6052765 - 6052871
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||||||| |||||||||| |||||   |||||| |||||   |||||||||||||||||||||||| |||||||| |  | |||||    
T  6052765 gaagcttgtgcattgacccctgccccaaaattttgaaattgttcaccgttataaacccaaacccaataattaggcataaatccaactttttccaagtgtt 6052864  T
Q  299 tcttcac 305  Q
    |||||||    
T  6052865 tcttcac 6052871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 13510146 - 13509873
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13510146 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgtt 13510047  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13510046 gacatcttcattgtattccacatttgtttccacatttgtttcaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 13509947  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13509946 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 13509873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 4446853 - 4447098
Alignment:
Q  72 ttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtt 171  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4446853 ttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtt 4446952  T
Q  172 tccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattag 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4446953 tccacatttgtttcaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattag 4447052  T
Q  272 gcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  4447053 gcataaaaccaactttttttaggtgtttcttcacatctccaggatc 4447098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 44 - 317
Target Start/End: Original strand, 33906554 - 33906827
Alignment:
Q  44 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgtt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33906554 gttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgatctgtgtt 33906653  T
Q  144 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttca 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33906654 gacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgacccctgccccaaaattctgaaacatttca 33906753  T
Q  244 ccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttcttcacatctccaggatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33906754 ccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 33906827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 8957067 - 8957095
Alignment:
Q  22 catcatcagctaccacaatgaagttgttc 50  Q
    |||||||||||||||||||||||||||||    
T  8957067 catcatcagctaccacaatgaagttgttc 8957095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 59145 - 59251
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| ||  |||||||||| ||||||  |||||| |||||  ||||||||||||||| ||||||||| |||||||| |  | |||||    
T  59145 gaagcttgtgcattgactcccgccccaaaattttgaaactgttcaccgttataaatccaaacccaataatcaggcataaatccaactttttccaagtgtt 59244  T
Q  299 tcttcac 305  Q
    |||||||    
T  59245 tcttcac 59251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 59037 - 59113
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattg 134  Q
    |||||||||||||| |||  ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||    
T  59037 tcatcttcaacatcatcattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattg 59113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 15742377 - 15742301
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattg 134  Q
    |||||||||||||| |||  ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||    
T  15742377 tcatcttcaacatcatcattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattg 15742301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 28953793 - 28953689
Alignment:
Q  201 agcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtttc 300  Q
    ||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| | ||||||| |||||||| |  | |||||||    
T  28953793 agcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaagcataaatccaactttctccaagtgtttc 28953694  T
Q  301 ttcac 305  Q
    |||||    
T  28953693 ttcac 28953689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 28953918 - 28953839
Alignment:
Q  58 tcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 137  Q
    ||||||||||| || | |  ||||||||||||||| |||||||| || || |||||||||| ||||||||||||||||||    
T  28953918 tcatcttcaacgtcattattgtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattgttc 28953839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 15742269 - 15742163
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||| ||  |||||||||| |||||   |||||| |||||  ||||||||||||||  ||||||||| |||||||| |  | |||||    
T  15742269 gaagcttgtgcattgactcccgccccaaaattttgaaattgttcaccgttataaatccaaacccaataaacaggcataaatccaactttttccaagtgtt 15742170  T
Q  299 tcttcac 305  Q
    |||||||    
T  15742169 tcttcac 15742163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 19334 - 19228
Alignment:
Q  199 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttgtttaggtgtt 298  Q
    ||||||||||||||||  ||  |||||||||| ||||||  |||| | |||||  ||||||||||||||| |  |||||| |||||||| |  | |||||    
T  19334 gaagcttgtgcattgattcccgccccaaaattttgaaactgttcatcgttataaatccaaacccaataatcacacataaatccaactttttccaagtgtt 19235  T
Q  299 tcttcac 305  Q
    |||||||    
T  19234 tcttcac 19228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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