View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21119_high_29 (Length: 303)
Name: NF21119_high_29
Description: NF21119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21119_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 411771 - 411506
Alignment:
| Q |
30 |
cttccttatttggctcttcatcgacgccaatagccataagcgctttcttcctacgcgatgttcttccaacgctcataaagctcacattcacatttttctc |
129 |
Q |
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| T |
411771 |
cttccttatttggctcttcatcgacgccaatagccataagcgctttcttcctacgcgatgttcttccaacactcataaagctcacattcacatttttctc |
411672 |
T |
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| Q |
130 |
gcctaatatgtttccgacagtaccaatcatcccaggttgatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatccc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411671 |
gcctaatatgtttccgacagtaccaatcatcccaggttgatcaatctgtctgcacaaaatcagattcccttctaagctcacatccacagcaaaagatccc |
411572 |
T |
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| Q |
230 |
acacatgtaaggtgtggtgtaccgtacttcacttttccatcaatgcttatctgaccagtctctgat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411571 |
acacatgtaaggtgtggtgtaccgtacttcacttttccatcaatgcttatctgaccagtctctgat |
411506 |
T |
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