View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21119_high_31 (Length: 300)

Name: NF21119_high_31
Description: NF21119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21119_high_31
NF21119_high_31
[»] chr7 (2 HSPs)
chr7 (19-300)||(861621-861902)
chr7 (19-300)||(1222898-1223179)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 861902 - 861621
Alignment:
Q  19 ggacatcatcaaaactgcccgtcattctgatgatgatatctcaatttatggctttatagctgggaagcctacctggccctcttggctgcttattattgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  861902 ggacatcatcaaaactgcccgtcattctgatgatgatatctcaatttatggctttatagctgggaagcctacctggccctcttggctgcttattattgct 861803  T
Q  119 atattgctgactctagcatccattacatcaatcatacccattaaatacattgttgaactaaggactgtttactccattgctatgggtgttgcccttggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  861802 atattgctgactctagcatccattacatcaatcatacccattaaatacattgttgaactaaggactgtttactccattgctatgggtgttgcccttggta 861703  T
Q  219 tctacatttctgctgaattctttgtctgggcatttgttttggatgttctcattgttgtcaccatggtttgtgcctctgtctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  861702 tctacatttctgctgaattctttgtctgggcatttgttttggatgttctcattgttgtcaccatggtttgtgcctctgtctt 861621  T

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Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 1223179 - 1222898
Alignment:
Q  19 ggacatcatcaaaactgcccgtcattctgatgatgatatctcaatttatggctttatagctgggaagcctacctggccctcttggctgcttattattgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223179 ggacatcatcaaaactgcccgtcattctgatgatgatatctcaatttatggctttatagctgggaagcctacctggccctcttggctgcttattattgct 1223080  T
Q  119 atattgctgactctagcatccattacatcaatcatacccattaaatacattgttgaactaaggactgtttactccattgctatgggtgttgcccttggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223079 atattgctgactctagcatccattacatcaatcatacccattaaatacattgttgaactaaggactgtttactccattgctatgggtgttgcccttggta 1222980  T
Q  219 tctacatttctgctgaattctttgtctgggcatttgttttggatgttctcattgttgtcaccatggtttgtgcctctgtctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222979 tctacatttctgctgaattctttgtctgggcatttgttttggatgttctcattgttgtcaccatggtttgtgcctctgtctt 1222898  T

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