View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_high_3 (Length: 414)
Name: NF2111_high_3
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 5297859 - 5297467
Alignment:
| Q |
16 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacatacacacatttatttgatacatata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5297859 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaagtaca-gatatcatcacacatacacacatttatttgatacatata |
5297761 |
T |
|
| Q |
116 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297760 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
5297661 |
T |
|
| Q |
216 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297660 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
5297561 |
T |
|
| Q |
316 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297560 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccc |
5297467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 54721706 - 54721314
Alignment:
| Q |
16 |
aaatggttgacatgcatgcatcaaaccacaaattactcgagaatccggcaataaaatacatgatatcatcacacatacacacatttatttgatacatata |
115 |
Q |
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| T |
54721706 |
aaatggttgacatgcgtgcatcaaaccacaaattactcgagaatccggcaataaaataca-gatatcatcacacatacacacatttatttgatacatata |
54721608 |
T |
|
| Q |
116 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721607 |
tagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatggattcggtat |
54721508 |
T |
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| Q |
216 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721507 |
gtatatttctacacaaattattgtactgagaacagtagcttttatcgatgccacataacttattatagttaatacaaatgatgaaaataagttttattat |
54721408 |
T |
|
| Q |
316 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721407 |
tatctttttgcgagacttatgagatttgtcatcatcatcatgaagctgatcagcttcatctttcactagtaattgattaactcttccatcaccc |
54721314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 54714664 - 54714572
Alignment:
| Q |
115 |
atagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgctcttagccacaatgga |
207 |
Q |
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| T |
54714664 |
atagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgga |
54714572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 54714781 - 54714731
Alignment:
| Q |
17 |
aatggttgacatgcatgcatcaaacc-acaaattactcgagaatccggcaa |
66 |
Q |
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| T |
54714781 |
aatggttgacatgcacgcatcaaaccaacaaatcactcgagaatccggcaa |
54714731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
128 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
175 |
Q |
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||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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