View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2111_high_4 (Length: 382)

Name: NF2111_high_4
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2111_high_4
NF2111_high_4
[»] chr4 (4 HSPs)
chr4 (18-382)||(20822611-20822975)
chr4 (100-182)||(36451331-36451414)
chr4 (111-158)||(17648059-17648107)
chr4 (113-152)||(39523189-39523228)
[»] chr7 (1 HSPs)
chr7 (237-315)||(3384050-3384128)
[»] scaffold0041 (1 HSPs)
scaffold0041 (113-158)||(27306-27351)
[»] chr1 (3 HSPs)
chr1 (113-160)||(6076057-6076104)
chr1 (100-182)||(47334260-47334343)
chr1 (116-160)||(31390744-31390788)
[»] chr8 (1 HSPs)
chr8 (113-158)||(5035194-5035239)
[»] chr5 (1 HSPs)
chr5 (113-158)||(33002017-33002062)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 20822611 - 20822975
Alignment:
Q  18 acagagcctaataagcaaaagagaaaaagaagaaataattttagggatttgatgttcatggtggtggtgggggcatcgaggggaaagaaatatgatggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  20822611 acagagcctaataagcaaaagagaaaaagaagaaataattttagggatttgatgttcatggtggtggtgggggaatggaggggaaagaaatatgatggaa 20822710  T
Q  118 gatagtgtaaaaaataatatagtgttaa-gagagtacgataaaagtttgtttttcattttatctaaaagttaaaatccaactttgacatagtagaaaagt 216  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20822711 gatagtgtaaaaaataatatagtgttaaagagagtacgataagagtttgtttttcattttatctaaaagttaaaatccaactttgacatagtagaaaagt 20822810  T
Q  217 ttaatatttttctgtatagcacaagttttgggaatgatttaaatcgtcaaagtagcgagaagttgatgtattttgtatgataaagttttgagagttactc 316  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20822811 ttaatatttttctgtatagcacaagtttttggaatgatttaaatcgtcaaagtagcgagaagttgatgtattttgtatgataaagttttgagagttactc 20822910  T
Q  317 nnnnnnngttggaacttggcaaacatttgtgttttgttataaaatgttgtgggttgtggttaacat 382  Q
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20822911 tttttttgttggaacttggcaaacatttgtgttttgtt-taaaatgttgtgggttgtggttaacat 20822975  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 36451331 - 36451414
Alignment:
Q  100 gaaagaaatatgatggaagatagtgtaaaa-aataatatagtgttaagagagtacgataaaagtttgtttttcattttatctaa 182  Q
    |||||| | ||| ||||||||||||||||| |||||| ||||||| |||||||| |||||   |||||||||||||| ||||||    
T  36451331 gaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttttcatttaatctaa 36451414  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 17648059 - 17648107
Alignment:
Q  111 gatggaagatagtgtaaaa-aataatatagtgttaagagagtacgataa 158  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  17648059 gatggaagatagtgtaaaacaataatatagtgttgagagagtaagataa 17648107  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 39523189 - 39523228
Alignment:
Q  113 tggaagatagtgtaaaaaataatatagtgttaagagagta 152  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  39523189 tggaagatagtgtaaaaaataatttagtgttgagagagta 39523228  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 3384128 - 3384050
Alignment:
Q  237 acaagttttgggaatgatttaaatcgtcaaagtagcgagaagttgatgtattttgtatgataaagttttgagagttact 315  Q
    ||||||||||||  || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3384128 acaagttttggggttggtttaaatggtcaaagtagtgagaagttgatgtattttgtatgataaagttttgagagttact 3384050  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 27351 - 27306
Alignment:
Q  113 tggaagatagtgtaaaaaataatatagtgttaagagagtacgataa 158  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||    
T  27351 tggaagatagtgtaaaaaataatttagtgttgagagagtatgataa 27306  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 6076104 - 6076057
Alignment:
Q  113 tggaagatagtgtaaaaaataatatagtgttaagagagtacgataaaa 160  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||    
T  6076104 tggaagatagtgtaaaaaataatttagtgttgagagactatgataaaa 6076057  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 47334343 - 47334260
Alignment:
Q  100 gaaagaaatatgatggaagatagtgtaaaa-aataatatagtgttaagagagtacgataaaagtttgtttttcattttatctaa 182  Q
    |||||| | ||| ||||||||||||||||| |||||| ||||||| |||||||| |||||   ||||||| |||||| ||||||    
T  47334343 gaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttctcatttaatctaa 47334260  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 31390744 - 31390788
Alignment:
Q  116 aagatagtgtaaaaaataatatagtgttaagagagtacgataaaa 160  Q
    |||||||||||||||||||| || |||| |||||||| |||||||    
T  31390744 aagatagtgtaaaaaataatctaatgttgagagagtaggataaaa 31390788  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 5035194 - 5035239
Alignment:
Q  113 tggaagatagtgtaaaaaataatatagtgttaagagagtacgataa 158  Q
    ||||||||||||||||| ||||| ||||||| |||||||| |||||    
T  5035194 tggaagatagtgtaaaacataatttagtgttgagagagtatgataa 5035239  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 33002062 - 33002017
Alignment:
Q  113 tggaagatagtgtaaaaaataatatagtgttaagagagtacgataa 158  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||    
T  33002062 tggaagatagtgtaaaaaataatttagtgttgagagaatatgataa 33002017  T

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