View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_high_5 (Length: 380)
Name: NF2111_high_5
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 52824034 - 52823677
Alignment:
| Q |
18 |
ttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactatatagtctctttc |
117 |
Q |
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| T |
52824034 |
ttctttcctacaaacaaagaaacaaatccaatgtatcattattataataaattcatgagttgatatagttaaatgaaattaatactatatagtctctttc |
52823935 |
T |
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| Q |
118 |
tatatataacaagtttagtatgcataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggtggtcgagagaga |
217 |
Q |
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| T |
52823934 |
tatatataacaagattagtatacataaatattggagagaattacgaggcaaatatcgcagagagggaaatggttgggagaattagggtggtcgagagaga |
52823835 |
T |
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| Q |
218 |
agcgacggtgtttggaggcgagtttgttagcatggtggacacggtgggtcgcaggtggagcataaggcagcatcatcggcggtgcaaaataaagaagcct |
317 |
Q |
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| T |
52823834 |
agcgacggtgtttggaggcgagtttgttagcatggtggacacggt-ggtcgcaggtggagcataaggcagcttcatcggcggtgcagaataaagaagcct |
52823736 |
T |
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| Q |
318 |
gccgtttgttacagacgtcgcactggatcttcataatatcaaatgtacctatgatactg |
376 |
Q |
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| T |
52823735 |
gccgtttgttacagacgtcgcactggatcttcataatatcaaatgtacgtatgatactg |
52823677 |
T |
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