View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2111_low_11 (Length: 361)

Name: NF2111_low_11
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2111_low_11
NF2111_low_11
[»] chr6 (15 HSPs)
chr6 (195-347)||(4254627-4254780)
chr6 (9-138)||(4254441-4254570)
chr6 (275-347)||(4258041-4258117)
chr6 (17-107)||(34187630-34187721)
chr6 (201-276)||(4257937-4258008)
chr6 (40-138)||(6197945-6198044)
chr6 (26-132)||(30465338-30465445)
chr6 (17-123)||(3807213-3807321)
chr6 (26-123)||(4408915-4409013)
chr6 (26-125)||(17957178-17957278)
chr6 (26-136)||(10313444-10313555)
chr6 (15-66)||(5644601-5644653)
chr6 (40-125)||(24672416-24672502)
chr6 (12-65)||(11458643-11458696)
chr6 (14-65)||(843984-844036)
[»] chr2 (8 HSPs)
chr2 (14-107)||(8794739-8794832)
chr2 (16-107)||(27694423-27694516)
chr2 (12-134)||(24490454-24490577)
chr2 (26-125)||(30640945-30641044)
chr2 (40-138)||(31994657-31994756)
chr2 (77-125)||(39293083-39293131)
chr2 (37-120)||(34904164-34904247)
chr2 (41-118)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (15-138)||(10467391-10467516)
chr8 (13-138)||(26938772-26938899)
chr8 (26-123)||(16483918-16484016)
chr8 (17-136)||(42023896-42024017)
chr8 (17-138)||(39344718-39344841)
chr8 (70-125)||(32797081-32797136)
chr8 (41-125)||(12597002-12597087)
chr8 (12-65)||(26938533-26938587)
chr8 (16-124)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (15-134)||(13009272-13009393)
chr7 (12-125)||(27567569-27567684)
chr7 (28-125)||(28098679-28098777)
chr7 (26-119)||(22485092-22485185)
chr7 (26-125)||(30851817-30851917)
chr7 (18-134)||(11297898-11298014)
chr7 (26-125)||(20132202-20132302)
chr7 (18-96)||(30851547-30851627)
chr7 (15-121)||(34471378-34471486)
chr7 (18-65)||(25411457-25411505)
chr7 (37-125)||(28564981-28565069)
chr7 (56-124)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (12-124)||(40391038-40391152)
chr4 (15-125)||(15025924-15026036)
chr4 (14-136)||(38377932-38378055)
chr4 (79-125)||(10574082-10574128)
chr4 (17-66)||(31049885-31049935)
chr4 (41-89)||(6449606-6449655)
chr4 (15-89)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (13-125)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (13-134)||(39340908-39341032)
chr3 (37-134)||(44446783-44446881)
chr3 (15-121)||(34359483-34359592)
chr3 (14-124)||(20315035-20315147)
chr3 (71-134)||(28769472-28769535)
chr3 (16-120)||(54783217-54783322)
chr3 (76-138)||(41544536-41544598)
chr3 (13-62)||(44648251-44648301)
chr3 (16-125)||(50334542-50334653)
[»] chr5 (13 HSPs)
chr5 (36-125)||(19343700-19343790)
chr5 (14-138)||(38948658-38948783)
chr5 (16-134)||(5459047-5459167)
chr5 (71-134)||(26724251-26724314)
chr5 (38-134)||(16089824-16089921)
chr5 (14-89)||(22860871-22860948)
chr5 (18-120)||(1298845-1298951)
chr5 (9-99)||(35270847-35270938)
chr5 (16-132)||(3746826-3746943)
chr5 (16-123)||(39057091-39057200)
chr5 (14-121)||(15070070-15070180)
chr5 (13-89)||(35529755-35529832)
chr5 (75-125)||(36235902-36235952)
[»] chr1 (5 HSPs)
chr1 (26-125)||(16545330-16545430)
chr1 (14-124)||(33752867-33752979)
chr1 (13-116)||(23230789-23230894)
chr1 (40-121)||(3891594-3891676)
chr1 (17-125)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (15-121)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (40-134)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (26-107)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 195 - 347
Target Start/End: Original strand, 4254627 - 4254780
Alignment:
Q  195 gaggactaaaccatagtctaagagtgaaatattgttccagtatgtagtatgtaagtaaatactggaacagcttcatcatcaggggcaacaggtttcatgg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  4254627 gaggactaaaccatagtctaagagtgaaatattgttccagtatgtagtatgtaagtaaatactggaacagcttcatcatcgggggcaacaagtttcatgg 4254726  T
Q  295 tagtgaccactgcatgtttgaaaattcgtatgaaaatga-cgacatgtttttcc 347  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4254727 tagtgaccactgcatgtttgaaaattcgtatgaaaatgaccgacatgtttttcc 4254780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 4254441 - 4254570
Alignment:
Q  9 aacatagggttaaatattttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttac 108  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  4254441 aacatagggttaaatattttttaatccgtataaaattacaagcttttaagtttagtcttcacaaaattttatttacttttaatccttattttcattttac 4254540  T
Q  109 aaggactattttggagggttaaaagtgtcc 138  Q
    ||||||||||||||||||||||||||||||    
T  4254541 aaggactattttggagggttaaaagtgtcc 4254570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 4258041 - 4258117
Alignment:
Q  275 aggggcaacaggtttcatggtagtgaccactgcatgtt---tgaaaattcgtatgaaaatgac-gacatgtttttcc 347  Q
    |||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||| || |||||||||||||    
T  4258041 aggggcaacaggtttcattgtagtgaccactgcatgttctgtgaaaattcgtatgaaaattactgacatgtttttcc 4258117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 34187721 - 34187630
Alignment:
Q  17 gttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcatttta 107  Q
    ||||||||| |||||||||| || ||||||||||  ||| ||||||||||| |||||| |||||||| ||||| |||||||||| |||||||    
T  34187721 gttaaatatgtttttagtccctacaaaattacaaatttttaagtttagtctccacaaatttttattctcttttcatccctatttgcatttta 34187630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 4257937 - 4258008
Alignment:
Q  201 taaaccatagtctaagagtgaaatattgttccagtatgtagtatgtaagtaaatactggaacagcttcatcatcag 276  Q
    ||||||||||||||||||| |||||||||| |||||||||||||     ||||||||| |||||||||||||||||    
T  4257937 taaaccatagtctaagagtaaaatattgttgcagtatgtagtat----ataaatactgtaacagcttcatcatcag 4258008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 6198044 - 6197945
Alignment:
Q  40 aaaattacaagctttcaagtttagtcttcac-aaaattttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagtgtcc 138  Q
    |||||||||||| |||||||||||||   || |||| |||||||||||||  ||| ||||| ||||||| | |||||||||||||||  |||||||||||    
T  6198044 aaaattacaagccttcaagtttagtccctacgaaaagtttattcacttttggtccttatttacattttatagggactattttggaggaataaaagtgtcc 6197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 30465338 - 30465445
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtct-tcacaaaattttattcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||||| ||||||||||||| |||||||||||||||| |   |||| ||||||||||| ||||||||| || ||| ||| |   ||||||||||||    
T  30465338 tttttagtccttataaaattacaaactttcaagtttagtctctataaaaaatttattcacttctaatccctacttacatcttatagacactattttggag 30465437  T
Q  125 ggttaaaa 132  Q
    | ||||||    
T  30465438 gattaaaa 30465445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 3807321 - 3807213
Alignment:
Q  17 gttaaatat-tttttagtccatataaaattacaagctttcaagtttagt--cttcacaaaattttattcacttttaatccctattttcattttacaagga 113  Q
    ||||||||| |||||||| | || |||||||||| ||||||||||||||  || || |||| |||||||||||||  ||| | ||||||||||| |||||    
T  3807321 gttaaatatgtttttagttcctaaaaaattacaaactttcaagtttagttcctaca-aaaagtttattcacttttggtccttgttttcattttataagga 3807223  T
Q  114 ctattttgga 123  Q
    ||||||||||    
T  3807222 ctattttgga 3807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 4408915 - 4409013
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttgga 123  Q
    |||||||||  | ||||||||||| |||| ||||||| || | |||||||||| ||||||||||| | ||||||| ||||||| | |||||||||||||    
T  4408915 tttttagtctctgtaaaattacaaacttttaagtttaatccttacaaaatttttattcacttttagttcctatttacattttatagggactattttgga 4409013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 17957278 - 17957178
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||| | ||||||||||||||||||||  ||||||| | | ||| |||| ||||| ||||| |||||||||  |||||| | ||||||||||||||    
T  17957278 tttttagttcttataaaattacaagctttcacatttagtccttataaattttttattcatttttagtccctatttgtattttatagggactattttggag 17957179  T
Q  125 g 125  Q
    |    
T  17957178 g 17957178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 10313555 - 10313444
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcaca-aaattttattcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||| | || ||||||||||||||| |||||||||||  ||| |||  ||||| | ||||| ||| ||||| ||||||| | ||||||||||||||    
T  10313555 tttttagttcttacaaaattacaagcttttaagtttagtctctacagaaaaattatttatttttagtccttatttgcattttatagggactattttggag 10313456  T
Q  125 ggttaaaagtgt 136  Q
    |  |||||||||    
T  10313455 gactaaaagtgt 10313444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 5644601 - 5644653
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtct 66  Q
    ||||||||||| |||||||||| |||||||||||||  |||||||||||||||    
T  5644601 gggttaaatatgtttttagtccttataaaattacaaattttcaagtttagtct 5644653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 24672502 - 24672416
Alignment:
Q  40 aaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||||||| ||||| |||||||||   |||||| ||||||||||| ||  ||||||||| ||| ||| | |||||||||||||||    
T  24672502 aaaattacaaactttctagtttagtccctacaaaaattttattcactattggtccctatttgcatcttaaatggactattttggagg 24672416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 11458643 - 11458696
Alignment:
Q  12 atagggttaaatattttttagtccatataaaattacaagctttcaagtttagtc 65  Q
    ||||| |||||||| ||||||||| || ||||||||||| |||| |||||||||    
T  11458643 ataggattaaatatattttagtccctacaaaattacaagttttcgagtttagtc 11458696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 843984 - 844036
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtc 65  Q
    |||||||||||| |||||||||||||||||| | | | |||||||||||||||    
T  843984 agggttaaatatgtttttagtccatataaaagtgcgacctttcaagtttagtc 844036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 8794832 - 8794739
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcatttta 107  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||| |||||||    
T  8794832 agggttaaatatgtttttagtccctataaaattgcaagctttcaagtttagtctaca-aaaattttattcacttttagtccctatttgcatttta 8794739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 27694423 - 27694516
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcac-aaaattttattcacttttaatccctattttcatttta 107  Q
    |||||||||| |||||||||| |||||||||||||  ||||||||||| |||  || |||| |||||||||||||||||||||||  |||||||    
T  27694423 ggttaaatatgtttttagtccctataaaattacaaattttcaagtttaatctctacaaaaaatttattcacttttaatccctattcacatttta 27694516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 24490454 - 24490577
Alignment:
Q  12 atagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaa 110  Q
    |||||||||||||  |||||||| | | |||||||||||||||| |||||||||  | | ||||  ||||||||||||| ||||||||| ||||||| |     
T  24490454 atagggttaaatacgtttttagttcctgtaaaattacaagcttttaagtttagttcttaaaaaaaattattcacttttagtccctatttgcattttatag 24490553  T
Q  111 ggactattttggagggttaaaagt 134  Q
     ||||||||| ||||  |||||||    
T  24490554 agactattttagaggactaaaagt 24490577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30640945 - 30641044
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||| ||| ||| ||||| |||||||||||||||| |||    ||  ||||||||||||||| ||||||||| ||||||| | |||||||||||||||    
T  30640945 tttttaatccctattaaatttcaagctttcaagtttaatctcggaaatgttttattcacttttagtccctatttgcattttaaagggactattttggagg 30641044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 31994657 - 31994756
Alignment:
Q  40 aaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagtgtcc 138  Q
    ||||||||||||||| |||| || |||  ||||||  |||||||| |||||||||| |||| ||||||| | ||||||||||||||| ||| ||||||||    
T  31994657 aaaattacaagcttttaagtataatctctacaaaaaatttattcatttttaatcccaatttgcattttatagggactattttggaggattacaagtgtcc 31994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 39293083 - 39293131
Alignment:
Q  77 ttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    ||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  39293083 ttattcacttttagtccctattttcattttatatggactattttggagg 39293131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 34904247 - 34904164
Alignment:
Q  37 tataaaattacaagctttcaagtttagt-cttcacaaaattttattcacttttaatccctattttcattttacaaggactatttt 120  Q
    |||||||||||||||||||||||||||| | ||| ||||  |||||  | |||| ||||||||| ||||||| ||||||||||||    
T  34904247 tataaaattacaagctttcaagtttagtccatca-aaaaacttatttgcatttagtccctatttgcattttaaaaggactatttt 34904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 29242495 - 29242573
Alignment:
Q  41 aaattacaagctttcaagtttagtcttcac-aaaattttattcacttttaatccctattttcattttacaaggactatt 118  Q
    |||||||||||||| |||||||||| | || ||||  |||||||||||||  |||||||| ||||||| | ||||||||    
T  29242495 aaattacaagcttttaagtttagtccttacaaaaaaattattcacttttagcccctatttgcattttatagggactatt 29242573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 10467391 - 10467516
Alignment:
Q  15 gggttaaatatttttta-gtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaagg 112  Q
    ||||||||||| ||||| |||| || |||||||||||||||||||||||||| | ||||||  |||||||| ||||| ||||||||| ||||||| | ||    
T  10467391 gggttaaatatattttaagtccctaaaaaattacaagctttcaagtttagtccttacaaaaaatttattcatttttagtccctatttgcattttataggg 10467490  T
Q  113 actattttggagggttaaaagtgtcc 138  Q
    |||||||||||||  |||||||||||    
T  10467491 actattttggaggactaaaagtgtcc 10467516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 26938772 - 26938899
Alignment:
Q  13 tagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaa 110  Q
    ||||||||||||| |||||||||| || ||||||||||||||| | ||||||||   ||||||  |||||||||||||| ||||||||| ||||||| |     
T  26938772 tagggttaaatatgtttttagtccctacaaaattacaagcttttatgtttagtccctacaaaaaatttattcacttttagtccctatttgcattttaaag 26938871  T
Q  111 ggactattttggagggttaaaagtgtcc 138  Q
    ||||||||||| |||  |||||||||||    
T  26938872 ggactattttgaaggactaaaagtgtcc 26938899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 16484016 - 16483918
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagt-cttcacaaaattttattcacttttaatccctattttcattttacaaggactattttgga 123  Q
    |||||||||| |||||||||||||| ||||||||||||| |||   |||||| |||||||||||| | ||||||| |||||||||  ||||||||||||    
T  16484016 tttttagtccctataaaattacaagttttcaagtttagtccttataaaaattgtattcacttttagttcctatttgcattttacagagactattttgga 16483918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 42023896 - 42024017
Alignment:
Q  17 gttaaatat-tttttagtccatataaaattacaagctttcaagtttagt-cttcacaaaattttattcacttttaatccctattttcattttacaaggac 114  Q
    ||||||||| |||||||||| || |||||||||| |||||||||||||| | |   ||||||||||||| ||||| ||||||||| | ||||| | ||||    
T  42023896 gttaaatatgtttttagtccctacaaaattacaaactttcaagtttagtacatacaaaaattttattcatttttagtccctatttgctttttatatggac 42023995  T
Q  115 tattttggagggttaaaagtgt 136  Q
    |||||||||||  |||||||||    
T  42023996 tattttggaggactaaaagtgt 42024017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 39344841 - 39344718
Alignment:
Q  17 gttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaaggac 114  Q
    ||||||||| |||||||||| |  ||||||||||||||| |||||| ||||  | ||||  |||||||||||||| ||||||||| ||||||| |  |||    
T  39344841 gttaaatatgtttttagtccctgcaaaattacaagcttttaagtttggtctctagaaaaaatttattcacttttagtccctatttacattttatagagac 39344742  T
Q  115 tattttggagggttaaaagtgtcc 138  Q
    |||||||||||  |||||||||||    
T  39344741 tattttggaggactaaaagtgtcc 39344718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 32797136 - 32797081
Alignment:
Q  70 caaaattttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||||||||||||||||| |||||| || ||||||| |||||||||||||||||    
T  32797136 caaaattttattcacttttagtccctaattgcattttataaggactattttggagg 32797081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 12597087 - 12597002
Alignment:
Q  41 aaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    ||||||||||||||||||| |||||   ||||| |||| |||||| |||| ||||||||| ||||||| | |||||||||||||||    
T  12597087 aaattacaagctttcaagtatagtccctacaaattttttattcacgtttagtccctatttgcattttatagggactattttggagg 12597002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 26938533 - 26938587
Alignment:
Q  12 atagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtc 65  Q
    |||||||||||||| |||||||||| || ||||||||||||||| ||||||||||    
T  26938533 atagggttaaatatgtttttagtccctacaaaattacaagcttttaagtttagtc 26938587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 35054939 - 35055049
Alignment:
Q  16 ggttaaatatttttt-agtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttca-ttttacaagga 113  Q
    |||||||||| |||| ||||| || ||||||||||| |||||||||||||    |||||| |||||||| ||||| ||| || || || ||||| | |||    
T  35054939 ggttaaatatgttttcagtccttacaaaattacaagttttcaagtttagttcctacaaaaatttattcatttttagtccttaattgcatttttataggga 35055038  T
Q  114 ctattttggag 124  Q
    |||||||||||    
T  35055039 ctattttggag 35055049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 13009272 - 13009393
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttacaagg 112  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||   |||||| ||||||||||  |||||| |||||| ||||||||| ||    
T  13009272 gggttaaatatatttttagtccctataaaattacaagctttcaagtttagtccctacaaaagttttattcacaattaatctctatttacattttacaggg 13009371  T
Q  113 actattttggagggttaaaagt 134  Q
    |||| ||||||||  |||||||    
T  13009372 actaatttggaggactaaaagt 13009393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 27567569 - 27567684
Alignment:
Q  12 atagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttaca 109  Q
    |||||||||||||| ||||||  || || ||||||||||| ||||||||||||||   | |||| |||| |||||||||||||| ||||| ||||||| |    
T  27567569 atagggttaaatatgtttttaacccctacaaaattacaagttttcaagtttagtccctaaaaaagttttcttcacttttaatccatatttgcattttata 27567668  T
Q  110 aggactattttggagg 125  Q
    ||||||||||||||||    
T  27567669 aggactattttggagg 27567684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 28098777 - 28098679
Alignment:
Q  28 tttagtccatataaaattacaagctttcaagtttagtcttcacaaaatt-ttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||| | |||||||||||||| ||| ||||||||| || ||||||   ||||| ||||||| ||||||||| ||||||| | |||||||||||||||    
T  28098777 tttagttcctataaaattacaaggttttaagtttagtttttacaaaaaaattatttacttttagtccctatttgcattttatagggactattttggagg 28098679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 22485092 - 22485185
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggactattt 119  Q
    |||||||||| |  |||||||| |||| | ||||||||||   ||||| ||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  22485092 tttttagtccctccaaaattaccagctcttaagtttagtccgtacaaatttttatttacttttagtccctatttgcattttataaggactattt 22485185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30851817 - 30851917
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtct-tcacaaaattttattcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||||| ||||||||||||| |||||||||||||||| |   |||| ||||||||||| ||||||||| || ||| ||| |   ||||||||||||    
T  30851817 tttttagtccttataaaattacaaactttcaagtttagtctctataaaaaatttattcacttctaatccctacttacatcttatagacactattttggag 30851916  T
Q  125 g 125  Q
    |    
T  30851917 g 30851917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 11298014 - 11297898
Alignment:
Q  18 ttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggacta 116  Q
    |||||||| |||||| ||| ||| ||||||||||||||||||||||||| ||  ||  ||||  ||||||||  |||||||||  |||||| | ||||||    
T  11298014 ttaaatatgtttttaatccctattaaattacaagctttcaagtttagtc-tcggaatttttttatcactttttgtccctatttgtattttaaagggacta 11297916  T
Q  117 ttttggagggttaaaagt 134  Q
    |||||||||  |||||||    
T  11297915 ttttggaggactaaaagt 11297898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 20132302 - 20132202
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||| | |||||||||||||||||| |  ||||||  | ||||| |||| ||||| ||||| |||||||||  |||||| | ||||||||||||||    
T  20132302 tttttagttcctataaaattacaagctttgacatttagttcttacaaattttttattcatttttagtccctatttgtattttatagggactattttggag 20132203  T
Q  125 g 125  Q
    |    
T  20132202 g 20132202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 30851547 - 30851627
Alignment:
Q  18 ttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatcccta 96  Q
    |||||||| |||||||||| |||||||||||||  |||||||||||||||  | ||||  |||||||||||||| ||||||    
T  30851547 ttaaatatgtttttagtccttataaaattacaaattttcaagtttagtctctataaaacatttattcacttttagtcccta 30851627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 34471486 - 34471378
Alignment:
Q  15 gggttaaatattttt-tagtccatataaaattacaagctttcaagtttagtcttcacaaaattt-tattcacttttaatccctattttcattttacaagg 112  Q
    ||||||||||| ||| |||||| || ||||||| ||||||| ||||||| |||  ||||||  | |||||||||||| ||||||||| ||||||| |  |    
T  34471486 gggttaaatatgtttctagtccttacaaaattataagctttaaagtttaatctctacaaaaaatgtattcacttttagtccctatttgcattttatagag 34471387  T
Q  113 actattttg 121  Q
    |||||||||    
T  34471386 actattttg 34471378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 25411457 - 25411505
Alignment:
Q  18 ttaaatat-tttttagtccatataaaattacaagctttcaagtttagtc 65  Q
    |||||||| |||||||||| | |||||||| ||||||||||||||||||    
T  25411457 ttaaatatgtttttagtccctgtaaaattagaagctttcaagtttagtc 25411505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 28564981 - 28565069
Alignment:
Q  37 tataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||||||| ||  ||| || ||||||||| |||||  |||||| ||||||||| |||||||  |||||| | | |||||||||||||    
T  28564981 tataaaattataaatttttaaatttagtctttacaaagatttatttacttttaattcctatttgtattttatatgaactattttggagg 28565069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 33992033 - 33991965
Alignment:
Q  56 aagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggactattttggag 124  Q
    ||||||||||| || ||  |||||||||| |||| |||||||||  |||||| ||||| ||||||||||    
T  33992033 aagtttagtctccaaaattttttattcacgtttagtccctatttgtattttataaggaatattttggag 33991965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 40391152 - 40391038
Alignment:
Q  12 atagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttaca 109  Q
    |||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||   ||||| |||| ||||||||||| ||||||||| ||||||| |    
T  40391152 atagggttaaatatgtttttagtccctataaaattacaagtttttaagtttagtccctacaaattttttattcacttttagtccctatttgcattttata 40391053  T
Q  110 aggactattttggag 124  Q
     ||||||||||||||    
T  40391052 gggactattttggag 40391038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 15026036 - 15025924
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttacaagg 112  Q
    ||||||||||| |||||||||  || |||||||||| |||| ||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||    
T  15026036 gggttaaatatgtttttagtcactacaaaattacaaacttttaagtttagtccctacaaaaattttattcatttttagtccctatttatattttataagg 15025937  T
Q  113 actattttggagg 125  Q
    |||||||||||||    
T  15025936 actattttggagg 15025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 38378055 - 38377932
Alignment:
Q  14 agggttaaatatttttta-gtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaagg 112  Q
    |||||||||||| ||||| || | || ||||| ||||| |||||| ||||||| | | ||  ||||||||||||||| ||||||||| ||||||| | ||    
T  38378055 agggttaaatatgttttaagttcttacaaaataacaagttttcaaatttagtccttaaaattttttattcacttttattccctatttgcattttataggg 38377956  T
Q  113 actattttggagggttaaaagtgt 136  Q
    |||||||||||||  |||||||||    
T  38377955 actattttggaggactaaaagtgt 38377932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 10574128 - 10574082
Alignment:
Q  79 attcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    |||||| |||| ||||||||| ||||||||| |||||||||||||||    
T  10574128 attcacctttagtccctatttgcattttacagggactattttggagg 10574082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 31049885 - 31049935
Alignment:
Q  17 gttaaatat-tttttagtccatataaaattacaagctttcaagtttagtct 66  Q
    ||||||||| |||||||||| || |||||||||| ||||||||||||||||    
T  31049885 gttaaatatgtttttagtccttacaaaattacaaactttcaagtttagtct 31049935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 6449606 - 6449655
Alignment:
Q  41 aaattacaagctttcaagtttagtcttcac-aaaattttattcactttta 89  Q
    ||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  6449606 aaattacaagctttcaagtttagtccttacaaaaaatttattcactttta 6449655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 48282965 - 48282889
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcac-aaaattttattcactttta 89  Q
    ||||||||||| |||||||||| || | ||||| ||||||||||||||||||   || |||| ||||||||||||||    
T  48282965 gggttaaatatatttttagtccgtacacaattaaaagctttcaagtttagtccctacaaaaaatttattcactttta 48282889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 16830 - 16943
Alignment:
Q  13 tagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaag 111  Q
    ||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| |  |||| ||||||||||||||| |||||||||  |||||| | |    
T  16830 tagggttaaatatgtttttagtccctataaaattaccaactttcaagtttagtcctaccaaatttttattcacttttagtccctatttgtattttatagg 16929  T
Q  112 gactattttggagg 125  Q
    ||||||||| ||||    
T  16930 gactattttagagg 16943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 39341032 - 39340908
Alignment:
Q  13 tagggttaaatat-tttttagtccatataaaattacaagctttcaagtttag--tcttcacaaaattttattcacttttaatccctattttcattttaca 109  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||  ||| || ||||  ||||||||||||| |  |||||||||||||| |    
T  39341032 tagggttaaatatgtttttaatccctataaaattacaagctttcaagtttagtctctacaaaaaaaattattcacttttactttctattttcattttata 39340933  T
Q  110 aggactattttggagggttaaaagt 134  Q
    | ||||||||||||||  |||||||    
T  39340932 atgactattttggaggactaaaagt 39340908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 44446783 - 44446881
Alignment:
Q  37 tataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttggagggttaaaagt 134  Q
    |||||||||||||||||||| |||||||  | |||||||||| ||||||||||| ||||||||| ||||||| | |||||||||||||||  |||||||    
T  44446783 tataaaattacaagctttcacgtttagttcttacaaaatttttattcacttttagtccctatttgcattttatagggactattttggaggactaaaagt 44446881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 34359592 - 34359483
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaa-ttacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttacaag 111  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||   |||||| ||||||||||||||||| ||||||| ||||||| | |    
T  34359592 gggttaaatatgtttttagtccctataaaaattacaagctttcaagtttagtccctacaaaaattttattcacttttaattcctatttacattttatagg 34359493  T
Q  112 gactattttg 121  Q
    |||| |||||    
T  34359492 gacttttttg 34359483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 20315147 - 20315035
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaag 111  Q
    |||||||||||| |||||||||  || |||||||||| ||||||||||||||||  | ||||  |||||||||||||| ||||||||| ||||||| | |    
T  20315147 agggttaaatatgtttttagtcactacaaaattacaaactttcaagtttagtctctataaaaaatttattcacttttagtccctatttacattttatagg 20315048  T
Q  112 gactattttggag 124  Q
    ||| |||||||||    
T  20315047 gacaattttggag 20315035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 28769472 - 28769535
Alignment:
Q  71 aaaattttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagt 134  Q
    |||| |||||||||||||| ||| ||||| ||||||| ||||||||||||||||| ||||||||    
T  28769472 aaaaatttattcacttttagtccttatttgcattttataaggactattttggaggattaaaagt 28769535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 54783322 - 54783217
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggac 114  Q
    |||||||||| |||||||||| || ||||||||||||||| |||| ||||| | ||||  ||| |||  |||||||||| |||||  |||||||| ||||    
T  54783322 ggttaaatatgtttttagtccttacaaaattacaagcttttaagtgtagtccttacaatttttaatttgcttttaatccttatttgaattttacagggac 54783223  T
Q  115 tatttt 120  Q
    ||||||    
T  54783222 tatttt 54783217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 41544536 - 41544598
Alignment:
Q  76 tttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagtgtcc 138  Q
    |||||||||||||| ||||||| | ||||||||| | ||||||||||| | ||||||||||||    
T  41544536 tttattcacttttagtccctatatgcattttacaggaactattttggaagattaaaagtgtcc 41544598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 44648301 - 44648251
Alignment:
Q  13 tagggttaaatatttttt-agtccatataaaattacaagctttcaagttta 62  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  44648301 tagggttaaatatttttttagtccctataaaattacaaactttcaagttta 44648251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 50334542 - 50334653
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaagga 113  Q
    |||||||||| |||||| ||| | |||||||| ||| |||||| |||||||   ||||||  |||||||||||||| | ||||||| ||||||| | |||    
T  50334542 ggttaaatatgtttttaatccttctaaaattataagttttcaaatttagtccctacaaaaaatttattcacttttagttcctatttgcattttataggga 50334641  T
Q  114 ctattttggagg 125  Q
    ||||||| ||||    
T  50334642 ctattttagagg 50334653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 19343790 - 19343700
Alignment:
Q  36 atataaaattacaagctttcaagtttag--tcttcacaaaattttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    ||||||||||||||||||||||||||||   || || |||| |||||||||||||| ||||||||| ||||||| |||||||| ||||||||    
T  19343790 atataaaattacaagctttcaagtttaggccctgca-aaaaatttattcacttttagtccctatttgcattttataaggactagtttggagg 19343700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 38948783 - 38948658
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaagg 112  Q
    |||||||||||| ||||||||   || ||||||||||| |||||||||||||||  ||||||  ||||||||||||  |||||||||  |||||| | ||    
T  38948783 agggttaaatatgtttttagtttctacaaaattacaagttttcaagtttagtctatacaaaacattattcacttttggtccctatttgaattttataggg 38948684  T
Q  113 actattttggagggttaaaagtgtcc 138  Q
    ||||||| || ||  |||||||||||    
T  38948683 actatttgggtggactaaaagtgtcc 38948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 5459047 - 5459167
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaagga 113  Q
    |||||||||| |||||||||  |||||||||| ||| ||| ||||||||||   ||||  |||| ||||| ||||||||||||||| ||||||| | |||    
T  5459047 ggttaaatatgtttttagtctctataaaattataagtttttaagtttagtccctacaatttttttattcatttttaatccctatttgcattttataggga 5459146  T
Q  114 ctattttggagggttaaaagt 134  Q
    ||||||||||||  |||||||    
T  5459147 ctattttggaggaataaaagt 5459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 26724314 - 26724251
Alignment:
Q  71 aaaattttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagt 134  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||||||||||  |||||||    
T  26724314 aaaaatttattcacttttagtctctattttcattttataaggactattttggaggactaaaagt 26724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 16089921 - 16089824
Alignment:
Q  38 ataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggactattttggagggttaaaagt 134  Q
    |||||||||||| |||||| |||||||| | ||||| |||| ||||||||||| ||| ||||| ||||||| | |||||||||| ||||  |||||||    
T  16089921 ataaaattacaaactttcacgtttagtccttacaaattttttattcacttttagtccatatttgcattttatagggactattttagaggactaaaagt 16089824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 22860871 - 22860948
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcactttta 89  Q
    |||||||||| | |||||||||| || ||||||||||||||| ||||||||| || |||||| |||||||||||||||    
T  22860871 agggttaaatgtgtttttagtccctacaaaattacaagctttaaagtttagtttttacaaaacttttattcactttta 22860948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 1298951 - 1298845
Alignment:
Q  18 ttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat---tttattcacttttaatccctattttcattttacaagga 113  Q
    |||||||| |||||||||| || ||||||||||||||| || |||||||   ||||||    |||||||||||||| ||||||||| ||||||| | |||    
T  1298951 ttaaatatgtttttagtccctacaaaattacaagcttttaaatttagtccctacaaaaaaaatttattcacttttagtccctatttgcattttataggga 1298852  T
Q  114 ctatttt 120  Q
    |||||||    
T  1298851 ctatttt 1298845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 35270938 - 35270847
Alignment:
Q  9 aacatagggttaaatattt-tttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattt 99  Q
    ||||| ||||||||||| | |||||| | || ||||||| || |||||||||||||||   | |||| ||||||||||||||||||||||||    
T  35270938 aacattgggttaaatatgtctttagttcctacaaaattaaaaactttcaagtttagtccctataaaaatttattcacttttaatccctattt 35270847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 3746943 - 3746826
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcattttacaaggac 114  Q
    |||||||||| |||||||| |||| ||| ||| ||   || |||||||||||  |||||| ||||||||||| |||||  ||||| ||||||| | ||||    
T  3746943 ggttaaatatgtttttagttcatacaaagttataactatttaagtttagtctctacaaaaatttattcacttataatctatatttacattttatagggac 3746844  T
Q  115 tattttggagggttaaaa 132  Q
    | ||||||||| ||||||    
T  3746843 tgttttggaggattaaaa 3746826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 39057091 - 39057200
Alignment:
Q  16 ggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaat-tttattcacttttaatccctattttcattttacaagga 113  Q
    |||||||||| |||||||||  || ||||||||||  ||| |||||| ||||  ||||||  |||||||||||||||||| ||||| |||||||   |||    
T  39057091 ggttaaatatatttttagtctctacaaaattacaaatttttaagtttggtctctacaaaaaatttattcacttttaatccttatttacattttattggga 39057190  T
Q  114 ctattttgga 123  Q
    ||||||||||    
T  39057191 ctattttgga 39057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 15070180 - 15070070
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtc--ttcacaaaattttattcacttttaatccctattttcattttacaa 110  Q
    |||| ||||||| |||||||||  || ||||||||||  ||| ||||||||||  | || |||| |||||||||||||| ||||||||| ||||||| |     
T  15070180 agggataaatatatttttagtctctaaaaaattacaaatttttaagtttagtccctacaaaaaaatttattcacttttagtccctatttacattttatag 15070081  T
Q  111 ggactattttg 121  Q
     ||||||||||    
T  15070080 agactattttg 15070070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 35529832 - 35529755
Alignment:
Q  13 tagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagt-cttcacaaaattttattcactttta 89  Q
    ||||||||||||| |||||||||| |||||||| || |  ||||||||||||| | ||| |||||||||||||||||||    
T  35529832 tagggttaaatatgtttttagtccctataaaatcacgacgtttcaagtttagtccctca-aaaattttattcactttta 35529755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 36235952 - 36235902
Alignment:
Q  75 ttttattcacttttaatccctattttcattttacaaggactattttggagg 125  Q
    ||||||||| ||||| ||| ||||| ||||||| |||||||||||||||||    
T  36235952 ttttattcatttttagtccttatttgcattttataaggactattttggagg 36235902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 16545330 - 16545430
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcac-aaaattttattcacttttaatccctattttcattttacaaggactattttggag 124  Q
    |||||||||| |||||||||||||| ||| |||||||||||  || |||| |||||||||||||| | || |||| ||||||  ||||||||||||||||    
T  16545330 tttttagtccctataaaattacaagtttttaagtttagtctgtacaaaaaatttattcacttttactaccaatttgcattttgtaaggactattttggag 16545429  T
Q  125 g 125  Q
    |    
T  16545430 g 16545430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 33752867 - 33752979
Alignment:
Q  14 agggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaa-aattttattcacttttaatccctattttcattttacaag 111  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||| ||   ||||   ||||||||||||||| ||| ||||| ||||||| | |    
T  33752867 agggttaaatatgtttttagtccctataaaattacaagctttccagtttaatccctacaatttttttattcacttttagtccttatttacattttatagg 33752966  T
Q  112 gactattttggag 124  Q
    |||||||||||||    
T  33752967 gactattttggag 33752979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 23230789 - 23230894
Alignment:
Q  13 tagggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaa 110  Q
    ||||||||||||| |||||||||  || ||||||||||  || |||||||||||   |||||||||| ||||||||||| || |||| | ||||||| ||    
T  23230789 tagggttaaatatgtttttagtctctacaaaattacaaatttacaagtttagtccctacaaaatttttattcacttttagtcactatatacattttataa 23230888  T
Q  111 ggacta 116  Q
    ||||||    
T  23230889 ggacta 23230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 3891676 - 3891594
Alignment:
Q  40 aaaattacaagctttcaagtttagtcttcacaaa-attttattcacttttaatccctattttcattttacaaggactattttg 121  Q
    ||||||||||| ||||||||||| |||  ||||  |||||||| |||||||||||||||||  |||||| |  ||||||||||    
T  3891676 aaaattacaagttttcaagtttaatctctacaattattttatttacttttaatccctatttgtattttatagagactattttg 3891594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 29307512 - 29307622
Alignment:
Q  17 gttaaatatttttta-gtccatataaaattacaagctttcaagtttagtcttcacaaaatttt-attcacttttaatccctattttcattttacaaggac 114  Q
    ||||||||| ||||| |||| |||||||||||||  ||  ||||||||||   ||||| |||| ||| ||| ||| ||||||||| ||||||| | ||||    
T  29307512 gttaaatatgttttaagtccctataaaattacaattttaaaagtttagtccctacaaattttttattaactcttagtccctatttgcattttatagggac 29307611  T
Q  115 tattttggagg 125  Q
    |||||||||||    
T  29307612 tattttggagg 29307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 152078 - 152186
Alignment:
Q  15 gggttaaatat-tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaa-ttttattcacttttaatccctattttcattttacaagg 112  Q
    ||||||||||| |||||||||| || ||||||| | |||| ||||||||||||| |||||| ||||| ||||||||| ||| ||||| ||||||| |  |    
T  152078 gggttaaatatgtttttagtccctacaaaattataggcttacaagtttagtctttacaaaagttttactcacttttagtccttatttgcattttatagag 152177  T
Q  113 actattttg 121  Q
    |||||||||    
T  152178 actattttg 152186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 253680 - 253775
Alignment:
Q  40 aaaattacaagctttcaagtttagtcttcacaaaatt-ttattcacttttaatccctattttcattttacaaggactattttggagggttaaaagt 134  Q
    ||||||||||||||| || ||||||||  ||||||   ||||||| |||||||| |||| | ||||||| | ||||||||||||||| ||||||||    
T  253680 aaaattacaagcttttaaatttagtctctacaaaaaaattattcatttttaatctctatctgcattttatagggactattttggaggattaaaagt 253775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 7414 - 7495
Alignment:
Q  26 tttttagtccatataaaattacaagctttcaagtttagtcttcacaaaattttattcacttttaatccctattttcatttta 107  Q
    |||||| ||| ||| |||||||||||||||||||||| |||  | ||  ||||||||| ||||| ||||||||| |||||||    
T  7414 tttttaatccctattaaattacaagctttcaagtttaatctcgaaaattttttattcatttttagtccctatttgcatttta 7495  T

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