View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2111_low_15 (Length: 314)

Name: NF2111_low_15
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2111_low_15
NF2111_low_15
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-296)||(93082-93378)
[»] chr4 (3 HSPs)
chr4 (139-292)||(162181-162334)
chr4 (145-292)||(103001-103148)
chr4 (2-90)||(103195-103283)
[»] chr7 (1 HSPs)
chr7 (145-292)||(13051901-13052048)
[»] chr3 (2 HSPs)
chr3 (145-287)||(12138115-12138257)
chr3 (20-63)||(12137987-12138030)
[»] chr8 (6 HSPs)
chr8 (145-292)||(5670850-5670997)
chr8 (145-286)||(5692596-5692737)
chr8 (145-282)||(5722940-5723077)
chr8 (2-57)||(5670699-5670754)
chr8 (2-57)||(5692447-5692502)
chr8 (2-57)||(5722787-5722842)


Alignment Details
Target: scaffold0013 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 93082 - 93378
Alignment:
Q  1 gccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatctataggtaaaagatttattcaaattagaaacatattatatgtta 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  93082 gccaaaattcaggtggcattgggttgcttccactccaatcaaaaagaccaagtatctataggtaaaagatatattcaaattagaaacatattatatgtta 93181  T
Q  101 gtttgcagacatttttatattgattgaatnnnnnnnn-cggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatca 199  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  93182 gtttgcagacatttttatattgattgaataaaaaaaaacggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaaca 93281  T
Q  200 cgaatccagtgtctcgctctagcgcaagcattgttttgaccgccatcaggcccttggccaagaatccgcatacatatgtagttgagtgcagtagaaa 296  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  93282 cgaatccagtgtcttgctctagcacaagcattgttttgaccgccatcaggaccttgtccaagaatccgcatacatatgtagttgagtgcagtagaaa 93378  T

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Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 162334 - 162181
Alignment:
Q  139 ggtacctaccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttga 238  Q
    |||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||    
T  162334 ggtagctaccgaaagccaagttttcccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtcttga 162235  T
Q  239 ccgccatcaggcccttggccaagaatccgcatacatatgtagttgagtgcagta 292  Q
    || |||||||| ||||  |||||||||||||||||||| |||||||||||||||    
T  162234 cctccatcaggtccttctccaagaatccgcatacatatatagttgagtgcagta 162181  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 103148 - 103001
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||| ||  | |||||||||| ||| |||||||| |||||||||| ||||||||||    
T  103148 taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgaccgcca 103049  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagttgagtgcagta 292  Q
    ||||| ||||  || ||||| ||||||||||| ||||| |||||||||    
T  103048 tcaggtccttctccgagaattcgcatacatatatagttaagtgcagta 103001  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 103283 - 103195
Alignment:
Q  2 ccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatctataggtaaaagatttattcaaattagaaacata 90  Q
    |||||| | ||| |||||||||||||||||   ||||||||| | |||||||||||||||||||| |||  ||||||||||| ||||||    
T  103283 ccaaaactcagggggcattgggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatacattcaaattagtaacata 103195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 13052048 - 13051901
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||| || |||||||||| |||||| |||    
T  13052048 taccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca 13051949  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagttgagtgcagta 292  Q
    || |||||||  |||||||| | ||  ||||| ||||| |||||||||    
T  13051948 tccggcccttctccaagaattctcaggcatatatagttcagtgcagta 13051901  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 12138115 - 12138257
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||| ||||| || |||||||||| |||||| |||    
T  12138115 taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttgctcttgcacaagcattgtcttgacctcca 12138214  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagttgagtg 287  Q
    | ||||||||  |||||||| ||||||||||| || |||||||    
T  12138215 ttaggcccttctccaagaattcgcatacatatataattgagtg 12138257  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 12137987 - 12138030
Alignment:
Q  20 tgggttgcttccactccaatcaaaaataccaagtatctataggt 63  Q
    ||||||| |||||||||||||||| | |||||||||||||||||    
T  12137987 tgggttggttccactccaatcaaatacaccaagtatctataggt 12138030  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 292
Target Start/End: Original strand, 5670850 - 5670997
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    ||||||||||||  ||||||||||||||||||  | ||| ||||||||||||||| ||||||| | ||| ||| |||| |||||||| | || ||| |||    
T  5670850 taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5670949  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagttgagtgcagta 292  Q
    |  || ||||  ||||| || ||||||||||||||||||||| |||||    
T  5670950 tttggaccttctccaagtattcgcatacatatgtagttgagtacagta 5670997  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 286
Target Start/End: Original strand, 5692596 - 5692737
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    ||||||||||||   |||||||||||||||||  | ||| ||||||||||||||| ||||||| | ||| ||| |||| |||||||| | || ||| |||    
T  5692596 taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5692695  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagttgagt 286  Q
    |  || ||||  ||||| || ||||| |||||||||||||||    
T  5692696 tttggaccttctccaagtattcgcatgcatatgtagttgagt 5692737  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 5722940 - 5723077
Alignment:
Q  145 taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgatcacgaatccagtgtctcgctctagcgcaagcattgttttgaccgcca 244  Q
    ||||||||||||  |||||||||||||||  |  | ||| ||||||||||||||| ||||||| | ||| ||| |||| |||||||| | || ||| |||    
T  5722940 taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca 5723039  T
Q  245 tcaggcccttggccaagaatccgcatacatatgtagtt 282  Q
    |  || ||||  ||||| || ||||| |||||||||||    
T  5723040 tttggaccttctccaagtattcgcatgcatatgtagtt 5723077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 5670699 - 5670754
Alignment:
Q  2 ccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct 57  Q
    |||||| | ||| ||||||||||||||| ||| ||||||||| |||||||||||||    
T  5670699 ccaaaactcagggggcattgggttgcttgcacgccaatcaaagataccaagtatct 5670754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 5692447 - 5692502
Alignment:
Q  2 ccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct 57  Q
    |||||| | ||| ||||||||||||||| ||| ||||||||| |||||||||||||    
T  5692447 ccaaaactcaggaggcattgggttgcttgcacgccaatcaaagataccaagtatct 5692502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 5722787 - 5722842
Alignment:
Q  2 ccaaaatttaggtggcattgggttgcttccactccaatcaaaaataccaagtatct 57  Q
    |||||| | ||| ||||||||||||||| ||| ||||||||| |||||||||||||    
T  5722787 ccaaaactcaggaggcattgggttgcttgcacgccaatcaaagataccaagtatct 5722842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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