View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_16 (Length: 288)
Name: NF2111_low_16
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42206610 - 42206879
Alignment:
| Q |
1 |
atgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaa |
100 |
Q |
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| T |
42206610 |
atgaccttcaggattggcgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaa |
42206709 |
T |
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| Q |
101 |
cagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagtaaaatatgaagag |
200 |
Q |
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| T |
42206710 |
cagctggttgcctttttggttgtgtttagtgacaagctcctactttctgttgagggacaatatcaattttttcagcagcagcagagtaaaatatgaagag |
42206809 |
T |
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| Q |
201 |
aatgtttctttacataacaaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtag |
270 |
Q |
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| T |
42206810 |
aatgtttctttacataacaaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtag |
42206879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 42213460 - 42213712
Alignment:
| Q |
18 |
cgtggtgacagtcgtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaacagctggttgccttttt |
117 |
Q |
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| T |
42213460 |
cgtggtgaccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcaattctggtgcgaacatctggttggctttct |
42213559 |
T |
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| Q |
118 |
ggttgtgtttagtgacaagctcctactttctgttgagggacaatgtcaattttttcagcagcagcagagtaaaatatgaagagaatgtttctttacataa |
217 |
Q |
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| T |
42213560 |
ggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaa |
42213659 |
T |
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| Q |
218 |
caaaagcattccaaatgaaagaagagataatatcaatgatgcaactgctgtag |
270 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
42213660 |
cagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtag |
42213712 |
T |
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