View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_18 (Length: 279)
Name: NF2111_low_18
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 55636403 - 55636149
Alignment:
| Q |
18 |
aagcttatttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtccca |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55636403 |
aagcttctttcttgatgatattcgtgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtccca |
55636304 |
T |
|
| Q |
118 |
caaaatcaagttattctcacaggtggcacatcagatgacataatacaagcagtgagaagagactagattcatggtaataagcaagtataacttttcgttc |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55636303 |
caaaatcaagttattctcacaggtggcacatgagatgacataatacaagcagtgagaagagactagattcatggtaataagcaagtataacttttcgttc |
55636204 |
T |
|
| Q |
218 |
ttcccaaaacaaaactcccccaccccctctaaaaacaaaattgattcctatgcta |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55636203 |
ttcccaaaacaaaactcccccaccccctctaaaaacaaaattgattcctaggcta |
55636149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 52984887 - 52985034
Alignment:
| Q |
42 |
tgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggt |
141 |
Q |
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||||||||| |||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| |
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| T |
52984887 |
tgtgattatgggtcagcaggctcaaaaggcatgagagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaatcaggtaattctcacaggt |
52984986 |
T |
|
| Q |
142 |
ggcacatcagatgacataatacaagcagtgagaagagactagattcat |
189 |
Q |
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| T |
52984987 |
gacacatgagatgaaaaaatacaaggggcgagaagagactagattcat |
52985034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 55664639 - 55664748
Alignment:
| Q |
52 |
tgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcag |
151 |
Q |
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||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||| || |
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| T |
55664639 |
tgtcaacagactcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtctcaccaaatcaagttattctcac--gtgacacatgag |
55664736 |
T |
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| Q |
152 |
atgacataatac |
163 |
Q |
| |
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|||||| ||||| |
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| T |
55664737 |
atgacaaaatac |
55664748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 51316076 - 51315967
Alignment:
| Q |
53 |
gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacatcaga |
152 |
Q |
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|
|||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||| ||||| |||||| ||||||| ||||||| ||||| ||| |
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| T |
51316076 |
gtcaacaggctcaaaaggcattggagtgaaccatgattgataacaacctgacaaaaagagccccaccaaatcaggttattcaaacaggtgacacatgaga |
51315977 |
T |
|
| Q |
153 |
tgacataata |
162 |
Q |
| |
|
|||||||||| |
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|
| T |
51315976 |
tgacataata |
51315967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 55658410 - 55658549
Alignment:
| Q |
54 |
tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcaca---tca |
150 |
Q |
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||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| |||| | | |
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| T |
55658410 |
tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacatattga |
55658509 |
T |
|
| Q |
151 |
gatgac-ataatacaagcagtgagaagagactagattcat |
189 |
Q |
| |
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|||||| | || ||||| ||||||||||||||||||||| |
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| T |
55658510 |
gatgacaaaaagacaaggggtgagaagagactagattcat |
55658549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 54861477 - 54861547
Alignment:
| Q |
53 |
gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaat |
123 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54861477 |
gtcaacaggctcaaaaggcatgggagtgaaccatgattgataatagcctgacaaaaagagtcccaccaaat |
54861547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 55620060 - 55620154
Alignment:
| Q |
54 |
tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacat |
148 |
Q |
| |
|
||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| ||||| |
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| T |
55620060 |
tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacat |
55620154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 55627364 - 55627458
Alignment:
| Q |
54 |
tcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtggcacat |
148 |
Q |
| |
|
||||||||||||||| | | |||||| ||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||| ||||| |
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| T |
55627364 |
tcaacaggctcaaaaggaatgggagtaaaccatgattgataatagcctgacaaatagagtcctaccaaatcaagtaattctcacaggtgacacat |
55627458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 54628128 - 54628043
Alignment:
| Q |
53 |
gtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcaca |
138 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||| |||||||||||||||||| ||| || |||||| || ||||||||| |
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| T |
54628128 |
gtcaacaggctcaaaagacatgggagtaaaccatgattgacaatagcctgacaaaaagaatcctaccaaatcaggtaattctcaca |
54628043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 3671556 - 3671616
Alignment:
| Q |
43 |
gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctga |
103 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||| |
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|
| T |
3671556 |
gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgacaatagcctga |
3671616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 55658585 - 55658655
Alignment:
| Q |
198 |
gcaagtataacttttcgttcttcccaaaacaaaact-cccccaccccctctaaaaacaaaattgattccta |
267 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| | ||||||||||| | |||||| ||||||||||||| |
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|
| T |
55658585 |
gcaagtataactattcgttctgcccaagacaaaaatccccccacccccacaaaaaaccaaattgattccta |
55658655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 9890703 - 9890561
Alignment:
| Q |
43 |
gtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtcccacaaaatcaagttattctcacaggtg |
142 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| ||| |
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|
| T |
9890703 |
gtgattatgggtcaacaggctcaaaaggcatgggagtgaaccatgatcgagaatagcctgacaaaaagagtcccacaaaatcaggtaattctcacaagtg |
9890604 |
T |
|
| Q |
143 |
gcacatcaga-tgacataatacaagcagtgagaagagactaga |
184 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||||| |
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|
| T |
9890603 |
acacatgagattgacataatacaaggggtgagaagagactaga |
9890561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 13402757 - 13402604
Alignment:
| Q |
42 |
tgtgattatttgtcaacaggctcaaaatgcacgggagtgaaccatgattgataatagcctgacaaaaagagtccc-acaaaatcaagttattctcacagg |
140 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | ||||| ||| |
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| T |
13402757 |
tgtgattatgggtcaacaggctcaaaagacatgggagtgaaccatgaccaataatagcctgacaaaaagagtcccaacaaaatcagataactctcaaagg |
13402658 |
T |
|
| Q |
141 |
tggcacatcagatgacataatacaagcagtgagaagagactagattcatggtaataa |
197 |
Q |
| |
|
|| ||| ||||||| || |||| | ||||||||| |||||||| |||||||||| |
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|
| T |
13402657 |
tgatgcatgagatgac--aaaacaaac-gtgagaagaaactagattaatggtaataa |
13402604 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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