View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2111_low_19 (Length: 253)
Name: NF2111_low_19
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 34409854 - 34410091
Alignment:
| Q |
1 |
ctcctgagcagccttccaagatagcaatgtggaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagttgcatttgttggatacta |
100 |
Q |
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| T |
34409854 |
ctcctgaccagccttccaagatagcaatgtggaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagttgcatttgttggatacta |
34409953 |
T |
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| Q |
101 |
tatattcggaaacaccgttgatgataatattttaatcacactacaacgccctacttggctcattgttactgctaacatctttgttattgttcatgttatt |
200 |
Q |
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| T |
34409954 |
tatattcggaaacaccgttgatgataatattttaatcacactacaacgccctacttggctcattgttactgctaacatctttgttattgttcatgttatt |
34410053 |
T |
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| Q |
201 |
ggtggctatcaggtgattatttcaactttttaattcat |
238 |
Q |
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| T |
34410054 |
ggtggctatcaggtgattatttcaactttttaattcat |
34410091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 38826783 - 38826645
Alignment:
| Q |
27 |
atgtggaaaggagtcgttgttgcatatttaggagtggccatttgctaccttccagttgcatttgttggatactatatattcggaaacaccgttgatgata |
126 |
Q |
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|||||||||||||| || ||||||| ||||||| || | |||||| | || ||||| ||| ||||||||||||| ||||||||| | |||||||||| |
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| T |
38826783 |
atgtggaaaggagttatttttgcatacataggagttgcattctgctacttccctgttgcctttattggatactatatgttcggaaactcagttgatgata |
38826684 |
T |
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| Q |
127 |
atattttaatcacactacaacgccctacttggctcattg |
165 |
Q |
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| T |
38826683 |
acatcctcatcacgctagagcatcctacttggctcattg |
38826645 |
T |
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