View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2111_low_20 (Length: 252)
Name: NF2111_low_20
Description: NF2111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2111_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41468140 - 41467899
Alignment:
| Q |
1 |
ccacatccagtttcatcgttcagacacatctccacaccttctatcactcccaagaaacttcagtagttttaagcactttcatatgtacgacattgttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41468140 |
ccacatccagtttcatcgttcagacacatctccacaccttctatcactcccaagaaacttcaatagttttaagcactttcatatgtacgacattgttatt |
41468041 |
T |
|
| Q |
101 |
caaaaccgttcnnnnnnncaagttcgtgaccctacttcttagttcttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41468040 |
caaaaccgttctttttttcaagttcgtgaccctacttcttagttcttactactaagcctatacgtagcttcattttgtcttttatcatcatcttgatcgt |
41467941 |
T |
|
| Q |
201 |
gcattgttagttagctaggnnnnnnnttcctcttgccctatg |
242 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41467940 |
gcattgttagttagctaggaaaaaaattcctcttgccctatg |
41467899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University